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Intawat Nookaew

TitleProfessor
InstitutionUniversity of Arkansas for Medical Sciences
DepartmentBiomedical Informatics, College of Medicine
Address200 South Cedar
Mail Slot # 782
Little Rock AR 72202
Phone501-603-1766
ORCID ORCID Icon0000-0001-8901-1088 Additional info
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    Other Positions
    TitleProfessor
    InstitutionUniversity of Arkansas for Medical Sciences
    DepartmentPhysiology and Cell Biology, College of Medicine


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    R01AR082418     (SCHULLER DE ALMEIDA, MARIA)Mar 22, 2024 - Feb 28, 2029
    NIH/Nat. Inst. of Arthritis & Musculoskeletal & Skin Diseases
    Antagonism of RANKL signaling by estrogen in osteoclasts
    Role: Principal Investigator
    R01HL166748     (MORELLO, ROY)Sep 1, 2023 - Jul 31, 2027
    NIH
    Lung developmental defects caused by type I collagen mutations in mouse models of osteogenesis imperfecta
    Role: Co-Investigator
    1R21CA285135     (MANZANO, MARK I)Aug 1, 2023 - Jul 31, 2025
    NIH/Nat. Cancer Institute
    Role of a latent OriLyt RNA in KSHV latency in primary effusion lymphoma
    Role: Principal Investigator
    2P20GM125503     (OBRIEN, CHARLES A)Apr 1, 2023 - Jan 31, 2028
    NIH/Nat. Inst. of General Medical Sciences
    Center for Musculoskeletal Disease Research (CMDR)
    Role: Principal Investigator
    #IA     (MORELLO, ROY)Jul 1, 2022 - Jun 30, 2024
    American Lung Association
    Elucidating the role of type I collagen mutations on respiratory function in osteogenesis imperfecta
    Role: Principal Investigator
    #IA-941372     (MORELLO, ROY)Jul 1, 2022 - Jun 30, 2024
    American Lung Association
    Elucidating the role of type I collagen mutations on respiratory function in osteogenesis imperfecta
    Role: Co-Investigator
    R56 AI150911     (Craig Forrest)Sep 14, 2020 - Aug 31, 2021
    NIH
    Defining mechanisms of KSHV pathogenesis using MHV68-KSHV chimeric viruses
    Role: Co-Investigator
    R56AI150911     (FORREST, JAMES CRAIG)Sep 14, 2020 - Aug 31, 2021
    NIH
    Defining mechanisms of KSHV pathogenesis using MHV68-KSHV chimeric viruses
    Role: Co-Investigator
    R01CA209882     (DELGADO-CALLE, JESUS)Mar 15, 2017 - Jun 30, 2028
    NIH
    Contribution of osteocytes to the musculoskeletal effects of Multiple Myeloma
    Role: Co-Investigator
         (Manolagas)Oct 1, 2016 - Sep 30, 2020
    VA Merit
    Estrogen, Androgen, Aging and Bone Loss in Males
    Role: Co-Investigator
    R01CA143130     (NAKAGAWA, MAYUMI)Jul 1, 2010 - Jun 30, 2026
    NIH
    Understanding and Enhancing T-Cell Responses to High Risk Human Papillomaviruses-Renewal
    Role: Co-Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions. Don't see publications published under other names? Login to add alternative names.
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    1. Ali MM, Nookaew I, Resende-Coelho A, Marques-Carvalho A, Warren A, Fu Q, Kim HN, O'Brien CA, Almeida M. Mechanisms of mitochondrial reactive oxygen species action in bone mesenchymal cells. bioRxiv. 2025 Mar 25. PMID: 40196660.
      View in: PubMed
    2. Kaur J, Adhikari M, Sabol HM, Anloague A, Khan S, Kurihara N, Diaz-delCastillo M, Andreasen CM, Barnes CL, Stambough JB, Palmieri M, Reyes-Castro O, Zarrer J, Taipaleenm?ki H, Ambrogini E, Almeida M, O'Brien CA, Nookaew I, Delgado-Calle J. Single-Cell Transcriptomic Analysis Identifies Senescent Osteocytes That Trigger Bone Destruction in Breast Cancer Metastasis. Cancer Res. 2024 12 02; 84(23):3936-3952. PMID: 39312185.
      View in: PubMed
    3. Kawang K, Thongsuk P, Cholsaktrakool P, Anuntakarun S, Kunadirek P, Chuaypen N, Nilgate S, Chatsuwan T, Nookaew I, Sangpiromapichai N, Nilaratanakul V. Sensitivity and specificity of Nanopore sequencing for detecting carbapenem and 3rd-generation cephalosporin-resistant Enterobacteriaceae in urine samples: Real-time simulation with public antimicrobial resistance gene database. Heliyon. 2024 Aug 30; 10(16):e35816. PMID: 39253247.
      View in: PubMed
    4. Sabol HM, Ashby C, Adhikari M, Anloague A, Kaur J, Khan S, Choudhury SR, Schinke C, Palmieri M, Barnes CL, Ambrogini E, Nookaew I, Delgado-Calle J. A NOTCH3-CXCL12-driven myeloma-tumor niche signaling axis promotes chemoresistance in multiple myeloma. Haematologica. 2024 08 01; 109(8):2606-2618. PMID: 38385272.
      View in: PubMed
    5. Nookaew I, Xiong J, Onal M, Bustamante-Gomez C, Wanchai V, Fu Q, Kim HN, Almeida M, O'Brien CA. Refining the identity of mesenchymal cell types associated with murine periosteal and endosteal bone. J Biol Chem. 2024 04; 300(4):107158. PMID: 38479598.
      View in: PubMed
    6. Azhar G, Verma A, Robeson MS, Patyal P, Nookaew I, Sharma S, Pangle A, Che Y, Wolfe RR, Wei JY. Short-Term Ingestion of Essential Amino Acid Based Nutritional Supplements or Whey Protein Improves the Physical Function of Older Adults Independently of Gut Microbiome. Mol Nutr Food Res. 2024 Mar; 68(6):e2300716. PMID: 38426663.
      View in: PubMed
    7. Nookaew I, Xiong J, Onal M, Bustamante-Gomez C, Wanchai V, Fu Q, Kim HN, Almeida M, O'Brien CA. A framework for defining mesenchymal cell types associated with murine periosteal and endosteal bone. bioRxiv. 2023 Nov 17. PMID: 38014179.
      View in: PubMed
    8. Cheng Y, Sun F, Alapat DV, Wanchai V, Mery D, Guo W, Cao H, Zhu Y, Ashby C, Bauer MA, Nookaew I, Siegel ER, Ying J, Chen JR, Gai D, Peng B, Xu H, Bailey C, Al Hadidi S, Schinke C, Thanendrarajan S, Zangari M, Chesi M, Bergsagel PL, van Rhee F, Janz S, Tricot G, Shaughnessy JD, Zhan F. High NEK2 expression in myeloid progenitors suppresses T?cell immunity in multiple myeloma. Cell Rep Med. 2023 10 17; 4(10):101214. PMID: 37794587.
      View in: PubMed
    9. Fu Q, Bustamante-Gomez NC, Reyes-Pardo H, Gubrij I, Escalona-Vargas D, Thostenson JD, Palmieri M, Goellner JJ, Nookaew I, Barnes CL, Stambough JB, Ambrogini E, O'Brien CA. Reduced osteoprotegerin expression by osteocytes may contribute to rebound resorption after denosumab discontinuation. JCI Insight. 2023 09 22; 8(18). PMID: 37581932.
      View in: PubMed
    10. Chuaypen N, Jinato T, Avihingsanon A, Nookaew I, Tanaka Y, Tangkijvanich P. Long-term benefit of DAAs on gut dysbiosis and microbial translocation in HCV-infected patients with and without HIV coinfection. Sci Rep. 2023 09 02; 13(1):14413. PMID: 37660163.
      View in: PubMed
    11. Wongsurawat T, Jenjaroenpun P, Anekwiang P, Arigul T, Thongrattana W, Jamshidi-Parsian A, Boysen G, Suriyaphol P, Suktitipat B, Srirabheebhat P, Cheunsuchon P, Tanboon J, Nookaew I, Sathornsumetee S. Exploiting nanopore sequencing for characterization and grading of IDH-mutant gliomas. Brain Pathol. 2024 01; 34(1):e13203. PMID: 37574201.
      View in: PubMed
    12. Mehdi SJ, Ghatak K, Ling W, Johnson SK, Epstein J, Nookaew I, Zangari M, Schinke C, Thanendrarajan S, van Rhee F, Yaccoby S. Growth and dormancy control of myeloma cells by mesenchymal stem cells. Leuk Res. 2023 10; 133:107355. PMID: 37499483.
      View in: PubMed
    13. Warren A, Porter RM, Reyes-Castro O, Ali MM, Marques-Carvalho A, Kim HN, Gatrell LB, Schipani E, Nookaew I, O'Brien CA, Morello R, Almeida M. The NAD salvage pathway in mesenchymal cells is indispensable for skeletal development in mice. Nat Commun. 2023 06 17; 14(1):3616. PMID: 37330524.
      View in: PubMed
    14. Marino S, Akel N, Li S, Cregor M, Jones M, Perez B, Troncoso G, Meeks J, Stewart S, Sato AY, Nookaew I, Bellido T. Author Correction: Reversal of the diabetic bone signature with anabolic therapies in mice. Bone Res. 2023 Jun 13; 11(1):32. PMID: 37311786.
      View in: PubMed
    15. Marino S, Akel N, Li S, Cregor M, Jones M, Perez B, Troncoso G, Meeks J, Stuart S, Sato AY, Nookaew I, Bellido T. Author Correction: Reversal of the diabetic bone signature with anabolic therapies in mice. Bone Res. 2023 May 06; 11(1):23. PMID: 37147286.
      View in: PubMed
    16. Marino S, Akel N, Li S, Cregor M, Jones M, Perez B, Troncoso G, Meeks J, Stewart S, Sato AY, Nookaew I, Bellido T. Reversal of the diabetic bone signature with anabolic therapies in mice. Bone Res. 2023 Apr 19; 11(1):19. PMID: 37076478.
      View in: PubMed
    17. Wanichthanarak K, Nookaew I, Pasookhush P, Wongsurawat T, Jenjaroenpun P, Leeratsuwan N, Wattanachaisaereekul S, Visessanguan W, Sirivatanauksorn Y, Nuntasaen N, Kuhakarn C, Reutrakul V, Ajawatanawong P, Khoomrung S. Revisiting chloroplast genomic landscape and annotation towards comparative chloroplast genomes of Rhamnaceae. BMC Plant Biol. 2023 Jan 28; 23(1):59. PMID: 36707785.
      View in: PubMed
    18. Agoro R, Nookaew I, Noonan ML, Marambio YG, Liu S, Chang W, Gao H, Hibbard LM, Metzger CE, Horan D, Thompson WR, Xuei X, Liu Y, Zhang C, Robling AG, Bonewald LF, Wan J, White KE. Single cell cortical bone transcriptomics define novel osteolineage gene sets altered in chronic kidney disease. Front Endocrinol (Lausanne). 2023; 14:1063083. PMID: 36777346.
      View in: PubMed
    19. Wanchai V, Jenjaroenpun P, Leangapichart T, Arrey G, Burnham CM, T?mmler MC, Delgado-Calle J, Regenberg B, Nookaew I. CReSIL: accurate identification of extrachromosomal circular DNA from long-read sequences. Brief Bioinform. 2022 11 19; 23(6). PMID: 36198068.
      View in: PubMed
    20. Gai D, Chen JR, Stewart JP, Nookaew I, Habelhah H, Ashby C, Sun F, Cheng Y, Li C, Xu H, Peng B, Garg TK, Schinke C, Thanendrarajan S, Zangari M, Chen F, Barlogie B, van Rhee F, Tricot G, Shaughnessy JD, Zhan F. CST6 suppresses osteolytic bone disease in multiple myeloma by blocking osteoclast differentiation. J Clin Invest. 2022 09 15; 132(18). PMID: 35881476.
      View in: PubMed
    21. Joffr? E, Xiao X, Correia MSP, Nookaew I, Sasse S, Globisch D, Zhu B, Sj?ling ?. Analysis of Growth Phases of Enterotoxigenic Escherichia coli Reveals a Distinct Transition Phase before Entry into Early Stationary Phase with Shifts in Tryptophan, Fucose, and Putrescine Metabolism and Degradation of Neurotransmitter Precursors. Microbiol Spectr. 2022 08 31; 10(4):e0175521. PMID: 35876501.
      View in: PubMed
    22. Kunadirek P, Pinjaroen N, Nookaew I, Tangkijvanich P, Chuaypen N. Transcriptomic Analyses Reveal Long Non-Coding RNA in Peripheral Blood Mononuclear Cells as a Novel Biomarker for Diagnosis and Prognosis of Hepatocellular Carcinoma. Int J Mol Sci. 2022 Jul 17; 23(14). PMID: 35887228.
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    23. Wadley T, Moon SH, DeMott MS, Wanchai V, Huang E, Dedon PC, Boysen G, Nookaew I. Nanopore Sequencing for Detection and Characterization of Phosphorothioate Modifications in Native DNA Sequences. Front Microbiol. 2022; 13:871937. PMID: 35531280.
      View in: PubMed
    24. Wongsurawat T, Jenjaroenpun P, Wanchai V, Nookaew I. Native RNA or cDNA Sequencing for Transcriptomic Analysis: A Case Study on Saccharomyces cerevisiae. Front Bioeng Biotechnol. 2022; 10:842299. PMID: 35497361.
      View in: PubMed
    25. Sabol HM, Amorim T, Ashby C, Halladay D, Anderson J, Cregor M, Sweet M, Nookaew I, Kurihara N, Roodman GD, Bellido T, Delgado-Calle J. Notch3 signaling between myeloma cells and osteocytes in the tumor niche promotes tumor growth and bone destruction. Neoplasia. 2022 06; 28:100785. PMID: 35390742.
      View in: PubMed
    26. Taylor MK, Williams EP, Wongsurawat T, Jenjaroenpun P, Nookaew I, Jonsson CB. Corrigendum: Amplicon-Based, Next-Generation Sequencing Approaches to Characterize Single Nucleotide Polymorphisms of Orthohantavirus Species. Front Cell Infect Microbiol. 2021; 11:804914. PMID: 35141171.
      View in: PubMed
    27. Wongsurawat T, Jenjaroenpun P, Nookaew I. Direct Sequencing of RNA and RNA Modification Identification Using Nanopore. Methods Mol Biol. 2022; 2477:71-77. PMID: 35524112.
      View in: PubMed
    28. Alkam D, Wongsurawat T, Nookaew I, Richardson AR, Ussery D, Smeltzer MS, Jenjaroenpun P. Is amplification bias consequential in transposon sequencing (TnSeq) assays? A case study with a Staphylococcus aureus TnSeq library subjected to PCR-based and amplification-free enrichment methods. Microb Genom. 2021 10; 7(10). PMID: 34596508.
      View in: PubMed
    29. Udaondo Z, Sittikankaew K, Uengwetwanit T, Wongsurawat T, Sonthirod C, Jenjaroenpun P, Pootakham W, Karoonuthaisiri N, Nookaew I. Comparative Analysis of PacBio and Oxford Nanopore Sequencing Technologies for Transcriptomic Landscape Identification of Penaeus monodon. Life (Basel). 2021 Aug 23; 11(8). PMID: 34440606.
      View in: PubMed
    30. Likhitweerawong N, Thonusin C, Boonchooduang N, Louthrenoo O, Nookaew I, Chattipakorn N, Chattipakorn SC. Profiles of urine and blood metabolomics in autism spectrum disorders. Metab Brain Dis. 2021 10; 36(7):1641-1671. PMID: 34338974.
      View in: PubMed
    31. Rodionov DA, Rodionova IA, Rodionov VA, Arzamasov AA, Zhang K, Rubinstein GM, Tanwee TNN, Bing RG, Crosby JR, Nookaew I, Basen M, Brown SD, Wilson CM, Klingeman DM, Poole FL, Zhang Y, Kelly RM, Adams MWW. Transcriptional Regulation of Plant Biomass Degradation and Carbohydrate Utilization Genes in the Extreme Thermophile Caldicellulosiruptor bescii. mSystems. 2021 Jun 29; 6(3):e0134520. PMID: 34060910.
      View in: PubMed
    32. Kunadirek P, Ariyachet C, Sriphoosanaphan S, Pinjaroen N, Sirichindakul P, Nookaew I, Chuaypen N, Tangkijvanich P. Identification of BHLHE40 expression in peripheral blood mononuclear cells as a novel biomarker for diagnosis and prognosis of hepatocellular carcinoma. Sci Rep. 2021 05 27; 11(1):11201. PMID: 34045534.
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    33. Kunadirek P, Chuaypen N, Jenjaroenpun P, Wongsurawat T, Pinjaroen N, Sirichindakul P, Nookaew I, Tangkijvanich P. Cell-Free DNA Analysis by Whole-Exome Sequencing for Hepatocellular Carcinoma: A Pilot Study in Thailand. Cancers (Basel). 2021 May 06; 13(9). PMID: 34066484.
      View in: PubMed
    34. Uengwetwanit T, Pootakham W, Nookaew I, Sonthirod C, Angthong P, Sittikankaew K, Rungrassamee W, Arayamethakorn S, Wongsurawat T, Jenjaroenpun P, Sangsrakru D, Leelatanawit R, Khudet J, Koehorst JJ, Schaap PJ, Martins Dos Santos V, Tangy F, Karoonuthaisiri N. A chromosome-level assembly of the black tiger shrimp (Penaeus monodon) genome facilitates the identification of growth-associated genes. Mol Ecol Resour. 2021 Jul; 21(5):1620-1640. PMID: 33586292.
      View in: PubMed
    35. Gatto F, Volpi N, Nilsson H, Nookaew I, Maruzzo M, Roma A, Johansson ME, Stierner U, Lundstam S, Basso U, Nielsen J. Glycosaminoglycan profiling in patients' plasma and urine predicts the occurrence of metastatic clear cell renal cell carcinoma. Cell Rep. 2021 Mar 02; 34(9):108795. PMID: 33657373.
      View in: PubMed
    36. Jenjaroenpun P, Wongsurawat T, Wadley TD, Wassenaar TM, Liu J, Dai Q, Wanchai V, Akel NS, Jamshidi-Parsian A, Franco AT, Boysen G, Jennings ML, Ussery DW, He C, Nookaew I. Decoding the epitranscriptional landscape from native RNA sequences. Nucleic Acids Res. 2021 01 25; 49(2):e7. PMID: 32710622.
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    37. Limjiasahapong S, Kaewnarin K, Jariyasopit N, Hongthong S, Nuntasaen N, Robinson JL, Nookaew I, Sirivatanauksorn Y, Kuhakarn C, Reutrakul V, Khoomrung S. UPLC-ESI-MRM/MS for Absolute Quantification and MS/MS Structural Elucidation of Six Specialized Pyranonaphthoquinone Metabolites From Ventilago harmandiana. Front Plant Sci. 2020; 11:602993. PMID: 33505413.
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    38. Yongkiettrakul S, Wongsurawat T, Jenjaroenpun P, Acheampong DA, Srimanote P, Maneerat K, Visessanguan W, Nookaew I. Genome sequences of antibiotic-resistant Streptococcus suis strains isolated from human patients and diseased and asymptomatic pigs in Thailand. Infect Genet Evol. 2021 01; 87:104674. PMID: 33316429.
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    39. Cheawchanlertfa P, Sutheeworapong S, Jenjaroenpun P, Wongsurawat T, Nookaew I, Cheevadhanarak S, Kosugi A, Pason P, Waeonukul R, Ratanakhanokchai K, Tachaapaikoon C. Clostridium manihotivorum sp. nov., a novel mesophilic anaerobic bacterium that produces cassava pulp-degrading enzymes. PeerJ. 2020; 8:e10343. PMID: 33240652.
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    40. Angthong P, Uengwetwanit T, Pootakham W, Sittikankaew K, Sonthirod C, Sangsrakru D, Yoocha T, Nookaew I, Wongsurawat T, Jenjaroenpun P, Rungrassamee W, Karoonuthaisiri N. Optimization of high molecular weight DNA extraction methods in shrimp for a long-read sequencing platform. PeerJ. 2020; 8:e10340. PMID: 33240651.
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    41. Taylor MK, Williams EP, Wongsurawat T, Jenjaroenpun P, Nookaew I, Jonsson CB. Amplicon-Based, Next-Generation Sequencing Approaches to Characterize Single Nucleotide Polymorphisms of Orthohantavirus Species. Front Cell Infect Microbiol. 2020; 10:565591. PMID: 33163416.
      View in: PubMed
    42. Nookaew I, Jenjaroenpun P, Du H, Wang P, Wu J, Wongsurawat T, Moon SH, Huang E, Wang Y, Boysen G. Detection and Discrimination of DNA Adducts Differing in Size, Regiochemistry, and Functional Group by Nanopore Sequencing. Chem Res Toxicol. 2020 12 21; 33(12):2944-2952. PMID: 32799528.
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    43. Pornputtapong N, Acheampong DA, Patumcharoenpol P, Jenjaroenpun P, Wongsurawat T, Jun SR, Yongkiettrakul S, Chokesajjawatee N, Nookaew I. KITSUNE: A Tool for Identifying Empirically Optimal K-mer Length for Alignment-Free Phylogenomic Analysis. Front Bioeng Biotechnol. 2020; 8:556413. PMID: 33072720.
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    44. Svahn SL, Pattanaik B, Grahnemo L, Gutierrez S, Nookaew I, Jansson JO, Johansson ME. Spleen proteomics data from high fat diet fed mice. Data Brief. 2020 Oct; 32:106110. PMID: 32904176.
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    45. Waldrip ZJ, Jenjaroenpun P, DeYoung O, Nookaew I, Taverna SD, Raney KD, Tackett AJ. Genome-wide Cas9 binding specificity in Saccharomyces cerevisiae. PeerJ. 2020; 8:e9442. PMID: 32821531.
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    46. Kim HN, Ponte F, Nookaew I, Ucer Ozgurel S, Marques-Carvalho A, Iyer S, Warren A, Aykin-Burns N, Krager K, Sardao VA, Han L, de Cabo R, Zhao H, Jilka RL, Manolagas SC, Almeida M. Estrogens decrease osteoclast number by attenuating mitochondria oxidative phosphorylation and ATP production in early osteoclast precursors. Sci Rep. 2020 07 20; 10(1):11933. PMID: 32686739.
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    47. Wongsurawat T, Gupta A, Jenjaroenpun P, Owens S, Forrest JC, Nookaew I. Author Correction: R-loop-forming Sequences Analysis in Thousands of Viral Genomes Identify A New Common Element in Herpesviruses. Sci Rep. 2020 Jul 17; 10(1):12173. PMID: 32678142.
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    48. Wongsurawat T, Jenjaroenpun P, De Loose A, Alkam D, Ussery DW, Nookaew I, Leung YK, Ho SM, Day JD, Rodriguez A. A novel Cas9-targeted long-read assay for simultaneous detection of IDH1/2 mutations and clinically relevant MGMT methylation in fresh biopsies of diffuse glioma. Acta Neuropathol Commun. 2020 06 20; 8(1):87. PMID: 32563269.
      View in: PubMed
    49. Kandel S, Sripiboon S, Jenjaroenpun P, Ussery DW, Nookaew I, Robeson MS, Wongsurawat T. 16S rRNA Gene Amplicon Profiling of Baby and Adult Captive Elephants in Thailand. Microbiol Resour Announc. 2020 Jun 11; 9(24). PMID: 32527771.
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    50. Skinner CM, Nookaew I, Ewing LE, Wongsurawat T, Jenjaroenpun P, Quick CM, Yee EU, Piccolo BD, ElSohly M, Walker LA, Gurley B, Koturbash I. Potential Probiotic or Trigger of Gut Inflammation - The Janus-Faced Nature of Cannabidiol-Rich Cannabis Extract. J Diet Suppl. 2020; 17(5):543-560. PMID: 32400224.
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    51. Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dr?ger A, Ebert BE, Edirisinghe JN, Faria JP, Feist AM, Fengos G, Fleming RMT, Garc?a-Jim?nez B, Hatzimanikatis V, van Helvoirt W, Henry CS, Hermjakob H, Herrg?rd MJ, Kaafarani A, Kim HU, King Z, Klamt S, Klipp E, Koehorst JJ, K?nig M, Lakshmanan M, Lee DY, Lee SY, Lee S, Lewis NE, Liu F, Ma H, Machado D, Mahadevan R, Maia P, Mardinoglu A, Medlock GL, Monk JM, Nielsen J, Nielsen LK, Nogales J, Nookaew I, Palsson BO, Papin JA, Patil KR, Poolman M, Price ND, Resendis-Antonio O, Richelle A, Rocha I, S?nchez BJ, Schaap PJ, Sheriff RSM, Shoaie S, Sonnenschein N, Teusink B, Vila?a P, Vik JO, Wodke JAH, Xavier JC, Yuan Q, Zakhartsev M, Zhang C. Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing. Nat Biotechnol. 2020 Apr; 38(4):504. PMID: 32265554.
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    52. Sittikankaew K, Pootakham W, Sonthirod C, Sangsrakru D, Yoocha T, Khudet J, Nookaew I, Uawisetwathana U, Rungrassamee W, Karoonuthaisiri N. Author Correction: Transcriptome analyses reveal the synergistic effects of feeding and eyestalk ablation on ovarian maturation in black tiger shrimp. Sci Rep. 2020 Mar 20; 10(1):5481. PMID: 32198472.
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    53. Vorapreeda T, Thammarongtham C, Palasak T, Srisuk T, Jenjaroenpun P, Wongsurawat T, Nookaew I, Laoteng K. Systematic genome analysis of a novel arachidonic acid-producing strain uncovered unique metabolic traits in the production of acetyl-CoA-derived products in Mortierellale fungi. Gene. 2020 May 30; 741:144559. PMID: 32169630.
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    54. Sittikankaew K, Pootakham W, Sonthirod C, Sangsrakru D, Yoocha T, Khudet J, Nookaew I, Uawisetwathana U, Rungrassamee W, Karoonuthaisiri N. Transcriptome analyses reveal the synergistic effects of feeding and eyestalk ablation on ovarian maturation in black tiger shrimp. Sci Rep. 2020 02 24; 10(1):3239. PMID: 32094422.
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    55. Jenjaroenpun P, Wongsurawat T, Udaondo Z, Anderson C, Lopez J, Mohan M, Tytarenko R, Walker B, Nookaew I, Ussery D, Kothari A, Jun SR. Complete Genome Sequences of Four Isolates of Vancomycin-Resistant Enterococcus faecium with the vanA Gene and Two Daptomycin Resistance Mutations, Obtained from Two Inpatients with Prolonged Bacteremia. Microbiol Resour Announc. 2020 Feb 06; 9(6). PMID: 32029568.
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    56. Woo CC, Liu W, Lin XY, Dorajoo R, Lee KW, Richards AM, Lee CN, Wongsurawat T, Nookaew I, Sorokin V. The interaction between 30b-5p miRNA and MBNL1 mRNA is involved in vascular smooth muscle cell differentiation in patients with coronary atherosclerosis. Int J Mol Sci. 2019 Dec 18; 21(1). PMID: 31861407.
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    57. Soni N, Ross AB, Scheers N, Nookaew I, Gabrielsson BG, Sandberg AS. The Omega-3 Fatty Acids EPA and DHA, as a Part of a Murine High-Fat Diet, Reduced Lipid Accumulation in Brown and White Adipose Tissues. Int J Mol Sci. 2019 Nov 24; 20(23). PMID: 31771283.
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    58. Uawisetwathana U, Chevallier OP, Xu Y, Kamolsukyeunyong W, Nookaew I, Somboon T, Toojinda T, Vanavichit A, Goodacre R, Elliott CT, Karoonuthaisiri N. Global metabolite profiles of rice brown planthopper-resistant traits reveal potential secondary metabolites for both constitutive and inducible defenses. Metabolomics. 2019 11 19; 15(12):151. PMID: 31741127.
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    59. Khoomrung S, Nookaew I, Sen P, Olafsdottir TA, Persson J, Moritz T, Andersen P, Harandi AM, Nielsen J. Metabolic Profiling and Compound-Class Identification Reveal Alterations in Serum Triglyceride Levels in Mice Immunized with Human Vaccine Adjuvant Alum. J Proteome Res. 2020 01 03; 19(1):269-278. PMID: 31625748.
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    60. Li X, Han L, Nookaew I, Mannen E, Silva MJ, Almeida M, Xiong J. Stimulation of Piezo1 by mechanical signals promotes bone anabolism. Elife. 2019 10 07; 8. PMID: 31588901.
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    96. Cabal A, Jun SR, Jenjaroenpun P, Wanchai V, Nookaew I, Wongsurawat T, Burgess MJ, Kothari A, Wassenaar TM, Ussery DW. Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes. Microb Ecol. 2018 Oct; 76(3):801-813. PMID: 29445826.
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    108. Linda J. Larson-Prior, Gohar Azhar, David G. Davila, Se-Ran Jun, Aaron S. Kemp, Intawat Nookaew, Jeanne Y. Wei, Trudy M. Wassenaar. Neurobiology of Sleep and Microbiomics in Aging. OBM Neurobiology. 2017; 1(2):doi:10.21926/obm.neurobiol.170.
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    138. Karlsson FH, Tremaroli V, Nookaew I, Bergstr?m G, Behre CJ, Fagerberg B, Nielsen J, B?ckhed F. Gut metagenome in European women with normal, impaired and diabetic glucose control. Nature. 2013 Jun 06; 498(7452):99-103. PMID: 23719380.
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    140. ?sterlund T, Nookaew I, Bordel S, Nielsen J. Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling. BMC Syst Biol. 2013 Apr 30; 7:36. PMID: 23631471.
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    141. Agren R, Liu L, Shoaie S, Vongsangnak W, Nookaew I, Nielsen J. The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum. PLoS Comput Biol. 2013; 9(3):e1002980. PMID: 23555215.
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    142. Thiele I, Swainston N, Fleming RM, Hoppe A, Sahoo S, Aurich MK, Haraldsdottir H, Mo ML, Rolfsson O, Stobbe MD, Thorleifsson SG, Agren R, B?lling C, Bordel S, Chavali AK, Dobson P, Dunn WB, Endler L, Hala D, Hucka M, Hull D, Jameson D, Jamshidi N, Jonsson JJ, Juty N, Keating S, Nookaew I, Le Nov?re N, Malys N, Mazein A, Papin JA, Price ND, Selkov E, Sigurdsson MI, Simeonidis E, Sonnenschein N, Smallbone K, Sorokin A, van Beek JH, Weichart D, Goryanin I, Nielsen J, Westerhoff HV, Kell DB, Mendes P, Palsson B?. A community-driven global reconstruction of human metabolism. Nat Biotechnol. 2013 May; 31(5):419-25. PMID: 23455439.
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    143. V?remo L, Nielsen J, Nookaew I. Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods. Nucleic Acids Res. 2013 Apr; 41(8):4378-91. PMID: 23444143.
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    144. Sanli K, Karlsson FH, Nookaew I, Nielsen J. FANTOM: Functional and taxonomic analysis of metagenomes. BMC Bioinformatics. 2013 Feb 01; 14:38. PMID: 23375020.
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    145. Jern?s M, Nookaew I, Wadenvik H, Olsson B. MicroRNA regulate immunological pathways in T-cells in immune thrombocytopenia (ITP). Blood. 2013 Mar 14; 121(11):2095-8. PMID: 23303824.
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    146. Shoaie S, Karlsson F, Mardinoglu A, Nookaew I, Bordel S, Nielsen J. Understanding the interactions between bacteria in the human gut through metabolic modeling. Sci Rep. 2013; 3:2532. PMID: 23982459.
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    147. Mardinoglu A, Agren R, Kampf C, Asplund A, Nookaew I, Jacobson P, Walley AJ, Froguel P, Carlsson LM, Uhlen M, Nielsen J. Integration of clinical data with a genome-scale metabolic model of the human adipocyte. Mol Syst Biol. 2013; 9:649. PMID: 23511207.
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    148. Nookaew I, Svensson PA, Jacobson P, Jern?s M, Taube M, Larsson I, Andersson-Assarsson JC, Sj?str?m L, Froguel P, Walley A, Nielsen J, Carlsson LM. Adipose tissue resting energy expenditure and expression of genes involved in mitochondrial function are higher in women than in men. J Clin Endocrinol Metab. 2013 Feb; 98(2):E370-8. PMID: 23264395.
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    149. Jern?s M, Nookaew I, Wadenvik H, Olsson B. Differential expression of T-cell genes in blood and bone marrow between ITP patients and controls. Thromb Haemost. 2013 Jan; 109(1):112-7. PMID: 23138397.
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    150. Papini M, Nookaew I, Uhl?n M, Nielsen J. Scheffersomyces stipitis: a comparative systems biology study with the Crabtree positive yeast Saccharomyces cerevisiae. Microb Cell Fact. 2012 Oct 09; 11:136. PMID: 23043429.
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    151. Nookaew I, Papini M, Pornputtapong N, Scalcinati G, Fagerberg L, Uhl?n M, Nielsen J. A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae. Nucleic Acids Res. 2012 Nov 01; 40(20):10084-97. PMID: 22965124.
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    152. Jern?s M, Malmestr?m C, Axelsson M, Olsson C, Nookaew I, Wadenvik H, Zetterberg H, Blennow K, Lycke J, Rudemo M, Olsson B. MS risk genes are transcriptionally regulated in CSF leukocytes at relapse. Mult Scler. 2013 Apr; 19(4):403-10. PMID: 22907940.
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    153. Agren R, Bordel S, Mardinoglu A, Pornputtapong N, Nookaew I, Nielsen J. Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT. PLoS Comput Biol. 2012; 8(5):e1002518. PMID: 22615553.
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    154. Khoomrung S, Chumnanpuen P, Jansa-ard S, Nookaew I, Nielsen J. Fast and accurate preparation fatty acid methyl esters by microwave-assisted derivatization in the yeast Saccharomyces cerevisiae. Appl Microbiol Biotechnol. 2012 Jun; 94(6):1637-46. PMID: 22569641.
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    155. Caspeta L, Shoaie S, Agren R, Nookaew I, Nielsen J. Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials. BMC Syst Biol. 2012 Apr 04; 6:24. PMID: 22472172.
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    156. Karlsson FH, F?k F, Nookaew I, Tremaroli V, Fagerberg B, Petranovic D, B?ckhed F, Nielsen J. Symptomatic atherosclerosis is associated with an altered gut metagenome. Nat Commun. 2012; 3:1245. PMID: 23212374.
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    157. Larsson E, Tremaroli V, Lee YS, Koren O, Nookaew I, Fricker A, Nielsen J, Ley RE, B?ckhed F. Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88. Gut. 2012 Aug; 61(8):1124-31. PMID: 22115825.
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    158. Lindqvist M, Nookaew I, Brinkenberg I, Samuelson E, Th?rn K, Nielsen J, Harandi AM. Unraveling molecular signatures of immunostimulatory adjuvants in the female genital tract through systems biology. PLoS One. 2011; 6(6):e20448. PMID: 21666746.
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    159. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 24157588.
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    160. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 26253670.
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    161. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 25722247.
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    162. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 22622761.
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    163. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 26928576.
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    164. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 24456840.
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    165. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 21846501.
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    166. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 27184840.
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    167. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 28954239.
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    168. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 29030469.
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    169. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 30591021.
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    170. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 30533643.
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    171. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 30834378.
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    172. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 29588665.
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    173. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 30016149.
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    174. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 32286400.
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    175. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 32795633.
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    176. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 32858186.
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    177. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 33335686.
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    178. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 33334896.
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    179. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 31626891.
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    180. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 31754144.
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    181. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 39843898.
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    182. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 37575184.
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    183. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 36992320.
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    184. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 34864385.
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    185. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 35715555.
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    186. McGoogan KE, Haafiz AB, Gonz?lez Peralta RP. Herpes simplex virus hepatitis in infants: clinical outcomes and correlates of disease severity. J Pediatr. 2011 Oct; 159(4):608-11. PMID: 34951964.
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    187. Karlsson FH, Nookaew I, Petranovic D, Nielsen J. Prospects for systems biology and modeling of the gut microbiome. Trends Biotechnol. 2011 Jun; 29(6):251-8. PMID: 21392838.
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    188. Karlsson FH, Ussery DW, Nielsen J, Nookaew I. A closer look at bacteroides: phylogenetic relationship and genomic implications of a life in the human gut. Microb Ecol. 2011 Apr; 61(3):473-85. PMID: 21222211.
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    189. Bordel S, Nookaew I. Systems biology or just biology? A report of the 11th International Conference on Systems Biology. Biotechnol J. 2010 Dec; 5(12):1257-60. PMID: 21154729.
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    190. Papini M, Nookaew I, Scalcinati G, Siewers V, Nielsen J. Phosphoglycerate mutase knock-out mutant Saccharomyces cerevisiae: physiological investigation and transcriptome analysis. Biotechnol J. 2010 Oct; 5(10):1016-27. PMID: 20815084.
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    191. Nookaew I, Gabrielsson BG, Holm?ng A, Sandberg AS, Nielsen J. Identifying molecular effects of diet through systems biology: influence of herring diet on sterol metabolism and protein turnover in mice. PLoS One. 2010 Aug 24; 5(8):e12361. PMID: 20808764.
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    192. Cvijovic M, Olivares-Hern?ndez R, Agren R, Dahr N, Vongsangnak W, Nookaew I, Patil KR, Nielsen J. BioMet Toolbox: genome-wide analysis of metabolism. Nucleic Acids Res. 2010 Jul; 38(Web Server issue):W144-9. PMID: 20483918.
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    193. Vongsangnak W, Nookaew I, Salazar M, Nielsen J. Analysis of genome-wide coexpression and coevolution of Aspergillus oryzae and Aspergillus niger. OMICS. 2010 Apr; 14(2):165-75. PMID: 20337533.
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    194. Nookaew I, Jewett MC, Meechai A, Thammarongtham C, Laoteng K, Cheevadhanarak S, Nielsen J, Bhumiratana S. The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism. BMC Syst Biol. 2008 Aug 07; 2:71. PMID: 18687109.
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    195. Nookaew I, Meechai A, Thammarongtham C, Laoteng K, Ruanglek V, Cheevadhanarak S, Nielsen J, Bhumiratana S. Identification of flux regulation coefficients from elementary flux modes: A systems biology tool for analysis of metabolic networks. Biotechnol Bioeng. 2007 Aug 15; 97(6):1535-49. PMID: 17238207.
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