 Metagenomics
"Metagenomics" is a descriptor in the National Library of Medicine's controlled vocabulary thesaurus,
MeSH (Medical Subject Headings). Descriptors are arranged in a hierarchical structure,
which enables searching at various levels of specificity.
The genomic analysis of assemblages of organisms.
| Descriptor ID |
D056186
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| MeSH Number(s) |
H01.158.273.343.350.261
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| Concept/Terms |
Metagenomics- Metagenomics
- Metagenomic
- Environmental Genomics
- Environmental Genomic
- Genomic, Environmental
- Genomics, Environmental
- Population Genomics
- Genomic, Population
- Genomics, Population
- Population Genomic
- Community Genomics
- Community Genomic
- Genomic, Community
- Genomics, Community
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Below are MeSH descriptors whose meaning is more general than "Metagenomics".
Below are MeSH descriptors whose meaning is more specific than "Metagenomics".
This graph shows the total number of publications written about "Metagenomics" by people in UAMS Profiles by year, and whether "Metagenomics" was a major or minor topic of these publications.
To see the data from this visualization as text, click here.
| Year | Major Topic | Minor Topic | Total |
|---|
| 2024 | 3 | 0 | 3 | | 2023 | 0 | 1 | 1 | | 2022 | 0 | 2 | 2 | | 2021 | 0 | 2 | 2 | | 2020 | 0 | 2 | 2 | | 2019 | 0 | 1 | 1 | | 2018 | 0 | 3 | 3 | | 2017 | 0 | 1 | 1 | | 2016 | 0 | 1 | 1 | | 2015 | 2 | 1 | 3 | | 2014 | 3 | 0 | 3 | | 2013 | 2 | 0 | 2 | | 2011 | 0 | 1 | 1 |
To return to the timeline, click here.
Below are the most recent publications written about "Metagenomics" by people in Profiles over the past ten years.
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Tan JK, Servellita V, Stryke D, Kelly E, Streithorst J, Sumimoto N, Foresythe A, Huh HJ, Nguyen J, Oseguera M, Brazer N, Tang J, Ingebrigtsen D, Fung B, Reyes H, Hillberg M, Chen A, Guevara H, Yagi S, Morales C, Wadford DA, Mourani PM, Langelier CR, de Lorenzi-Tognon M, Benoit P, Chiu CY. Laboratory validation of a clinical metagenomic next-generation sequencing assay for respiratory virus detection and discovery. Nat Commun. 2024 Nov 12; 15(1):9016.
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Bokulich NA, Robeson MS. Bioinformatics challenges for profiling the microbiome in cancer: pitfalls and opportunities. Trends Microbiol. 2024 Dec; 32(12):1163-1166.
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Acheampong DA, Jenjaroenpun P, Wongsurawat T, Kurilung A, Pomyen Y, Kandel S, Kunadirek P, Chuaypen N, Kusonmano K, Nookaew I. CAIM: coverage-based analysis for identification of microbiome. Brief Bioinform. 2024 Jul 25; 25(5).
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Mick E, Tsitsiklis A, Kamm J, Kalantar KL, Caldera S, Lyden A, Tan M, Detweiler AM, Neff N, Osborne CM, Williamson KM, Soesanto V, Leroue M, Maddux AB, Sim?es EA, Carpenter TC, Wagner BD, DeRisi JL, Ambroggio L, Mourani PM, Langelier CR. Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children. J Clin Invest. 2023 04 03; 133(7).
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Kharofa J, Apewokin S, Alenghat T, Ollberding NJ. Metagenomic analysis of the fecal microbiome in colorectal cancer patients compared to healthy controls as a function of age. Cancer Med. 2023 02; 12(3):2945-2957.
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Tsitsiklis A, Osborne CM, Kamm J, Williamson K, Kalantar K, Dudas G, Caldera S, Lyden A, Tan M, Neff N, Soesanto V, Harris JK, Ambroggio L, Maddux AB, Carpenter TC, Reeder RW, Locandro C, Sim?es EAF, Leroue MK, Hall MW, Zuppa AF, Carcillo J, Meert KL, Sapru A, Pollack MM, McQuillen PS, Notterman DA, Dean JM, Zinter MS, Wagner BD, DeRisi JL, Mourani PM, Langelier CR. Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics. Lancet Microbe. 2022 04; 3(4):e284-e293.
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Robeson MS, O'Rourke DR, Kaehler BD, Ziemski M, Dillon MR, Foster JT, Bokulich NA. RESCRIPt: Reproducible sequence taxonomy reference database management. PLoS Comput Biol. 2021 11; 17(11):e1009581.
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Crowder SL, Hoogland AI, Welniak TL, LaFranchise EA, Carpenter KM, Li D, Rotroff DM, Mariam A, Pierce CM, Fischer SM, Kinney AY, Dong-Binh Tran T, Rastegari F, Berry DL, Extermann M, Kim RD, Tometich DB, Figueiredo JC, Muzaffar J, Bari S, Turner K, Weinstock GM, Jim HSL. Metagenomics and chemotherapy-induced nausea: A roadmap for future research. Cancer. 2022 02 01; 128(3):461-470.
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Zhang Q, Dao T. A distance based multisample test for high-dimensional compositional data with applications to the human microbiome. BMC Bioinformatics. 2020 Dec 03; 21(Suppl 9):205.
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Nayfach S, Roux S, Seshadri R, Udwary D, Varghese N, Schulz F, Wu D, Paez-Espino D, Chen IM, Huntemann M, Palaniappan K, Ladau J, Mukherjee S, Reddy TBK, Nielsen T, Kirton E, Faria JP, Edirisinghe JN, Henry CS, Jungbluth SP, Chivian D, Dehal P, Wood-Charlson EM, Arkin AP, Tringe SG, Visel A, Woyke T, Mouncey NJ, Ivanova NN, Kyrpides NC, Eloe-Fadrosh EA. A genomic catalog of Earth's microbiomes. Nat Biotechnol. 2021 04; 39(4):499-509.
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Tepaamorndech S, Nookaew I, Higdon SM, Santiyanont P, Phromson M, Chantarasakha K, Mhuantong W, Plengvidhya V, Visessanguan W. Metagenomics in bioflocs and their effects on gut microbiome and immune responses in Pacific white shrimp. Fish Shellfish Immunol. 2020 Nov; 106:733-741.
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Udaondo Z, Duque E, Daddaoua A, Caselles C, Roca A, Pizarro-Tobias P, Ramos JL. Developing robust protein analysis profiles to identify bacterial acid phosphatases in genomes and metagenomic libraries. Environ Microbiol. 2020 08; 22(8):3561-3571.
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Quan J, Langelier C, Kuchta A, Batson J, Teyssier N, Lyden A, Caldera S, McGeever A, Dimitrov B, King R, Wilheim J, Murphy M, Ares LP, Travisano KA, Sit R, Amato R, Mumbengegwi DR, Smith JL, Bennett A, Gosling R, Mourani PM, Calfee CS, Neff NF, Chow ED, Kim PS, Greenhouse B, DeRisi JL, Crawford ED. FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences. Nucleic Acids Res. 2019 08 22; 47(14):e83.
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Wankhade UD, Zhong Y, Kang P, Alfaro M, Chintapalli SV, Piccolo BD, Mercer KE, Andres A, Thakali KM, Shankar K. Maternal High-Fat Diet Programs Offspring Liver Steatosis in a Sexually Dimorphic Manner in Association with Changes in Gut Microbial Ecology in Mice. Sci Rep. 2018 11 07; 8(1):16502.
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Vishnivetskaya TA, Buongiorno J, Bird J, Krivushin K, Spirina EV, Oshurkova V, Shcherbakova VA, Wilson G, Lloyd KG, Rivkina EM. Methanogens in the Antarctic Dry Valley permafrost. FEMS Microbiol Ecol. 2018 08 01; 94(8).
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Piccolo BD, Graham JL, Stanhope KL, Nookaew I, Mercer KE, Chintapalli SV, Wankhade UD, Shankar K, Havel PJ, Adams SH. Diabetes-associated alterations in the cecal microbiome and metabolome are independent of diet or environment in the UC Davis Type 2 Diabetes Mellitus Rat model. Am J Physiol Endocrinol Metab. 2018 11 01; 315(5):E961-E972.
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Ganger DR, Rule J, Rakela J, Bass N, Reuben A, Stravitz RT, Sussman N, Larson AM, James L, Chiu C, Lee WM. Acute Liver Failure of Indeterminate Etiology: A Comprehensive Systematic Approach by An Expert Committee to Establish Causality. Am J Gastroenterol. 2018 09; 113(9):1319.
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Duque E, Daddaoua A, Cordero BF, Udaondo Z, Molina-Santiago C, Roca A, Solano J, Molina-Alcaide E, Segura A, Ramos JL. Ruminal metagenomic libraries as a source of relevant hemicellulolytic enzymes for biofuel production. Microb Biotechnol. 2018 07; 11(4):781-787.
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Mourani PM, Sontag MK. Ventilator-Associated Pneumonia in Critically Ill Children: A New Paradigm. Pediatr Clin North Am. 2017 10; 64(5):1039-1056.
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Utturkar SM, Cude WN, Robeson MS, Yang ZK, Klingeman DM, Land ML, Allman SL, Lu TY, Brown SD, Schadt CW, Podar M, Doktycz MJ, Pelletier DA. Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis. Appl Environ Microbiol. 2016 09 15; 82(18):5698-708.
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Jun SR, Robeson MS, Hauser LJ, Schadt CW, Gorin AA. PanFP: pangenome-based functional profiles for microbial communities. BMC Res Notes. 2015 Sep 26; 8:479.
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Sohn MB, Du R, An L. A robust approach for identifying differentially abundant features in metagenomic samples. Bioinformatics. 2015 Jul 15; 31(14):2269-75.
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Land M, Hauser L, Jun SR, Nookaew I, Leuze MR, Ahn TH, Karpinets T, Lund O, Kora G, Wassenaar T, Poudel S, Ussery DW. Insights from 20 years of bacterial genome sequencing. Funct Integr Genomics. 2015 Mar; 15(2):141-61.
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