 Computer Simulation
"Computer Simulation" is a descriptor in the National Library of Medicine's controlled vocabulary thesaurus,
MeSH (Medical Subject Headings). Descriptors are arranged in a hierarchical structure,
which enables searching at various levels of specificity.
Computer-based representation of physical systems and phenomena such as chemical processes.
| Descriptor ID |
D003198
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| MeSH Number(s) |
L01.224.160
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| Concept/Terms |
Computer Simulation- Computer Simulation
- Computer Simulations
- Simulation, Computer
- Simulations, Computer
- Computerized Models
- Computerized Model
- Model, Computerized
- Models, Computerized
- Models, Computer
- Computer Models
- Computer Model
- Model, Computer
In Silico- In Silico
- In Silicos
- Silico, In
- Silicos, In
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Below are MeSH descriptors whose meaning is more general than "Computer Simulation".
Below are MeSH descriptors whose meaning is more specific than "Computer Simulation".
This graph shows the total number of publications written about "Computer Simulation" by people in UAMS Profiles by year, and whether "Computer Simulation" was a major or minor topic of these publications.
To see the data from this visualization as text, click here.
| Year | Major Topic | Minor Topic | Total |
|---|
| 2025 | 0 | 2 | 2 | | 2024 | 0 | 2 | 2 | | 2023 | 0 | 7 | 7 | | 2022 | 0 | 3 | 3 | | 2021 | 0 | 1 | 1 | | 2020 | 2 | 3 | 5 | | 2019 | 1 | 3 | 4 | | 2018 | 1 | 5 | 6 | | 2017 | 1 | 4 | 5 | | 2016 | 2 | 5 | 7 | | 2015 | 1 | 8 | 9 | | 2014 | 0 | 7 | 7 | | 2013 | 3 | 10 | 13 | | 2012 | 0 | 16 | 16 | | 2011 | 0 | 7 | 7 | | 2010 | 0 | 5 | 5 | | 2009 | 1 | 8 | 9 | | 2008 | 0 | 10 | 10 | | 2007 | 1 | 4 | 5 | | 2006 | 0 | 8 | 8 | | 2005 | 0 | 2 | 2 | | 2004 | 0 | 3 | 3 | | 2003 | 0 | 4 | 4 | | 2002 | 0 | 2 | 2 | | 2001 | 0 | 1 | 1 | | 2000 | 0 | 2 | 2 | | 1999 | 0 | 1 | 1 | | 1998 | 0 | 1 | 1 | | 1995 | 1 | 2 | 3 | | 1991 | 0 | 1 | 1 | | 1990 | 1 | 2 | 3 |
To return to the timeline, click here.
Below are the most recent publications written about "Computer Simulation" by people in Profiles over the past ten years.
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Liang CJ, Luo C, Kranzler HR, Bian J, Chen Y. Communication-efficient federated learning of temporal effects on opioid use disorder with data from distributed research networks. J Am Med Inform Assoc. 2025 Apr 01; 32(4):656-664.
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Wan F. Propensity Score Matching: should we use it in designing observational studies? BMC Med Res Methodol. 2025 Jan 29; 25(1):25.
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Ramaker ME, Abdulrahim JW, Corey KM, Ramaker RC, Kwee LC, Kraus WE, Shah SH. Cardiovascular Disease Pathogenicity Predictor (CVD-PP): A Tissue-Specific In Silico Tool for Discriminating Pathogenicity of Variants of Unknown Significance in Cardiovascular Disease Genes. Circ Genom Precis Med. 2024 Dec; 17(6):e004464.
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Dudding CC, Zraick RI, Dudding SM. The Use of Simulation in Communication Sciences and Disorders: A Follow-Up Survey. Am J Speech Lang Pathol. 2024 Sep 18; 33(5):2399-2423.
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Yu CY, Mannen EM, Lujan TJ, Uzer G, Upasani V, Edmonds EW, Fitzpatrick CK. Porcine computational modeling to investigate developmental dysplasia of the hip. J Orthop Res. 2024 Sep; 42(9):2043-2053.
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Boateng ST, Roy T, Torrey K, Owunna U, Banang-Mbeumi S, Basnet D, Niedda E, Alexander AD, Hage DE, Atchimnaidu S, Nagalo BM, Aryal D, Findley A, Seeram NP, Efimova T, Sechi M, Hill RA, Ma H, Chamcheu JC, Murru S. Synthesis, in silico modelling, and in?vitro biological evaluation of substituted pyrazole derivatives as potential anti-skin cancer, anti-tyrosinase, and antioxidant agents. J Enzyme Inhib Med Chem. 2023 Dec; 38(1):2205042.
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Prabhu AV, Peterman M, Kesaria A, Samanta S, Crownover R, Lewis GD. Virtual reality technology: A potential tool to enhance brachytherapy training and delivery. Brachytherapy. 2023 Nov-Dec; 22(6):709-715.
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Shayan AM, Singh S, Gao J, Groff RE, Bible J, Eidt JF, Sheahan M, Gandhi SS, Blas JV, Singapogu R. Measuring hand movement for suturing skill assessment: A simulation-based study. Surgery. 2023 11; 174(5):1184-1192.
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Hosseini S, Palmada N, Avci R, Suresh V, Cheng LK. MRI Derived Simulations of Flow Patterns in the Stomach. Annu Int Conf IEEE Eng Med Biol Soc. 2023 07; 2023:1-4.
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Bhutiani M, Hester D. The Affect Grid in Simulation: We Need Explicit Educational Goals. Simul Healthc. 2023 10 01; 18(5):348.
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Yamamoto N, Ejima K, Zoh RS, Brown AW. Bias in nutrition-health associations is not eliminated by excluding extreme reporters in empirical or simulation studies. Elife. 2023 04 05; 12.
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Lu Z, Suzuki A, Wang D. Statistical methods for exploring spontaneous adverse event reporting databases for drug-host factor interactions. BMC Med Res Methodol. 2023 03 27; 23(1):71.
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Chowdhury S, Wang R, Yu Q, Huntoon CJ, Karnitz LM, Kaufmann SH, Gygi SP, Birrer MJ, Paulovich AG, Peng J, Wang P. DAGBagM: learning directed acyclic graphs of mixed variables with an application to identify protein biomarkers for treatment response in ovarian cancer. BMC Bioinformatics. 2022 Aug 05; 23(1):321.
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Rico D, Kent D, Karataraki N, Mikulasova A, Berlinguer-Palmini R, Walker BA, Javierre BM, Russell LJ, Brackley CA. High-resolution simulations of chromatin folding at genomic rearrangements in malignant B cells provide mechanistic insights into proto-oncogene deregulation. Genome Res. 2022 Jul 27; 32(7):1355-1366.
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Golzarri-Arroyo L, Dickinson SL, Jamshidi-Naeini Y, Zoh RS, Brown AW, Owora AH, Li P, Oakes JM, Allison DB. Evaluation of the type I error rate when using parametric bootstrap analysis of a cluster randomized controlled trial with binary outcomes and a small number of clusters. Comput Methods Programs Biomed. 2022 Mar; 215:106654.
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Chatzipapas KP, Papadimitroulas P, Loudos G, Papanikolaou N, Kagadis GC. IDDRRA: A novel platform, based on Geant4-DNA to quantify DNA damage by ionizing radiation. Med Phys. 2021 May; 48(5):2624-2636.
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Sadr AS, Eslahchi C, Ghassempour A, Kiaei M. In silico studies reveal structural deviations of mutant profilin-1 and interaction with riluzole and edaravone in amyotrophic lateral sclerosis. Sci Rep. 2021 03 25; 11(1):6849.
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Landes RD. Comment on "Designing Robust N-of-1 Studies for Precision Medicine: Simulation Study and Design Recommendations". J Med Internet Res. 2020 09 15; 22(9):e16179.
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Licon AL, Alexandrian A, Saenz D, Myers P, Rasmussen K, Stathakis S, Papanikolaou N, Kirby N. An open-source tool to visualize potential cone collisions while planning SRS cases. J Appl Clin Med Phys. 2020 Oct; 21(10):40-47.
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Liu S, Deng X, Zhang P, Wang X, Fan Y, Zhou S, Mu S, Mehta JL, Ding Z. Blood flow patterns regulate PCSK9 secretion via MyD88-mediated pro-inflammatory cytokines. Cardiovasc Res. 2020 08 01; 116(10):1721-1732.
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Ali AA, Mannen EM, Rullkoetter PJ, Shelburne KB. Validated Computational Framework for Evaluation of In Vivo Knee Mechanics. J Biomech Eng. 2020 Aug 01; 142(8).
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Cilingiroglu M, Marmagkiolis K. Role of simulators on structural training. Catheter Cardiovasc Interv. 2020 05 01; 95(6):1210-1211.
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Ejima K, Brown AW, Smith DL, Beyaztas U, Allison DB. Murine genetic models of obesity: type I error rates and the power of commonly used analyses as assessed by plasmode-based simulation. Int J Obes (Lond). 2020 06; 44(6):1440-1449.
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Zhang Q. Testing Differential Gene Networks under Nonparanormal Graphical Models with False Discovery Rate Control. Genes (Basel). 2020 02 05; 11(2).
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Harkey T, Govind Kumar V, Hettige J, Tabari SH, Immadisetty K, Moradi M. The Role of a Crystallographically Unresolved Cytoplasmic Loop in Stabilizing the Bacterial Membrane Insertase YidC2. Sci Rep. 2019 10 08; 9(1):14451.
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Cochran AL, Cisler JM. A flexible and generalizable model of online latent-state learning. PLoS Comput Biol. 2019 09; 15(9):e1007331.
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Kennedy RC, Smith AK, Ropella GEP, McGill MR, Jaeschke H, Hunt CA. Propagation of Pericentral Necrosis During Acetaminophen-Induced Liver Injury: Evidence for Early Interhepatocyte Communication and Information Exchange. Toxicol Sci. 2019 05 01; 169(1):151-166.
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Demirel D, Cetinsaya B, Halic T, Kockara S, Ahmadi S. Partition-based optimization model for generative anatomy modeling language (POM-GAML). BMC Bioinformatics. 2019 Mar 14; 20(Suppl 2):105.
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Wan F. Analyzing pre-post designs using the analysis of covariance models with and without the interaction term in a heterogeneous study population. Stat Methods Med Res. 2020 01; 29(1):189-204.
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Hou TT, Lin F, Bai S, Cleves MA, Xu HM, Lou XY. Generalized multifactor dimensionality reduction approaches to identification of genetic interactions underlying ordinal traits. Genet Epidemiol. 2019 02; 43(1):24-36.
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LeCompte M, Stewart M, Harris T, Rives G, Guth C, Ehrenfeld J, Sexton K, Terhune K. See one, do one, teach one: A randomized controlled study evaluating the benefit of autonomy in surgical education. Am J Surg. 2019 02; 217(2):281-287.
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Kiaei M, Balasubramaniam M, Govind Kumar V, Shmookler Reis RJ, Moradi M, Varughese KI. ALS-causing mutations in profilin-1 alter its conformational dynamics: A computational approach to explain propensity for aggregation. Sci Rep. 2018 08 30; 8(1):13102.
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Barnette DA, Davis MA, Dang NL, Pidugu AS, Hughes T, Swamidass SJ, Boysen G, Miller GP. Lamisil (terbinafine) toxicity: Determining pathways to bioactivation through computational and experimental approaches. Biochem Pharmacol. 2018 10; 156:10-21.
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Hejazi II, Khanam R, Mehdi SH, Bhat AR, Rizvi MMA, Thakur SC, Athar F. Antioxidative and anti-proliferative potential of Curculigo orchioides Gaertn in oxidative stress induced cytotoxicity: In vitro, ex vivo and in silico studies. Food Chem Toxicol. 2018 May; 115:244-259.
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Kumar P, Goer F, Murray L, Dillon DG, Beltzer ML, Cohen AL, Brooks NH, Pizzagalli DA. Impaired reward prediction error encoding and striatal-midbrain connectivity in depression. Neuropsychopharmacology. 2018 06; 43(7):1581-1588.
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Han Y, Oakley E, Shafirstein G, Rabin Y, Kara LB. Reconstruction of a Deformed Tumor Based on Fiducial Marker Registration: A Computational Feasibility Study. Technol Cancer Res Treat. 2018 01 01; 17:1533034618766792.
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Pacca P, Jhawar SS, Seclen DV, Wang E, Snyderman C, Gardner PA, Aboud E, Fernandez-Miranda JC. "Live Cadaver" Model for Internal Carotid Artery Injury Simulation in Endoscopic Endonasal Skull Base Surgery. Oper Neurosurg (Hagerstown). 2017 12 01; 13(6):732-738.
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Parcon PA, Balasubramaniam M, Ayyadevara S, Jones RA, Liu L, Shmookler Reis RJ, Barger SW, Mrak RE, Griffin WST. Apolipoprotein E4 inhibits autophagy gene products through direct, specific binding to CLEAR motifs. Alzheimers Dement. 2018 02; 14(2):230-242.
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Boushehrian HH, Abouali O, Jafarpur K, Ghaffarieh A, Ahmadi G. Relationship between saccadic eye movements and formation of the Krukenberg's spindle-a CFD study. Math Med Biol. 2017 09 01; 34(3):293-312.
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Gonzalez D, Bradley JS, Blumer J, Yogev R, Watt KM, James LP, Palazzi DL, Bhatt-Mehta V, Sullivan JE, Zhang L, Murphy J, Ussery XT, Puttagunta S, Dunne MW, Cohen-Wolkowiez M. Dalbavancin Pharmacokinetics and Safety in Children 3 Months to 11 Years of Age. Pediatr Infect Dis J. 2017 07; 36(7):645-653.
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Kashkoush AI, Prabhu AV, Agarwal N. Advocating for preclinical surgical skills curricula during medical school. Med Teach. 2017 07; 39(7):788.
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Mason A, Engelen MPKJ, Ivanov I, Toffolo GM, Deutz NEP. A four-compartment compartmental model to assess net whole body protein breakdown using a pulse of phenylalanine and tyrosine stable isotopes in humans. Am J Physiol Endocrinol Metab. 2017 07 01; 313(1):E63-E74.
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Glazko G, Rahmatallah Y, Zybailov B, Emmert-Streib F. Extracting the Strongest Signals from Omics Data: Differentially Expressed Pathways and Beyond. Methods Mol Biol. 2017; 1613:125-159.
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Govindan RB, Kota S, Al-Shargabi T, Massaro AN, Chang T, du Plessis A. Effect of electrocardiogram interference on cortico-cortical connectivity analysis and a possible solution. J Neurosci Methods. 2016 09 01; 270:76-84.
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Chatburn RL, Mireles-Cabodevila E, Sasidhar M. Tidal volume measurement error in pressure control modes of mechanical ventilation: A model study. Comput Biol Med. 2016 08 01; 75:235-42.
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Wan F, Mitra N. An evaluation of bias in propensity score-adjusted non-linear regression models. Stat Methods Med Res. 2018 03; 27(3):846-862.
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Kim J, Park JM, Kim M, Heo SJ, Shin IH, Kim M. Comparison of experience curves between two 3-dimensional intraoral scanners. J Prosthet Dent. 2016 Aug; 116(2):221-30.
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Fisher W, Wang J, George NI, Gearhart JM, McLanahan ED. Dietary Iodine Sufficiency and Moderate Insufficiency in the Lactating Mother and Nursing Infant: A Computational Perspective. PLoS One. 2016; 11(3):e0149300.
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Arnaoutakis K, Anders M, Berry K. Simulating Four Essential Conversations with Hematology/Oncology Trainees: a Qualitative Evaluation. J Cancer Educ. 2016 Mar; 31(1):55-62.
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House T, Schwebel DC, Mullins SH, Sutton AJ, Swearingen CJ, Bai S, Aitken ME. Video intervention changes parent perception of all-terrain vehicle (ATV) safety for children. Inj Prev. 2016 10; 22(5):328-33.
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Stathakis S, Balbi F, Chronopoulos AT, Papanikolaou N. Monte Carlo modeling of linear accelerator using distributed computing. J BUON. 2016 Jan-Feb; 21(1):252-60.
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Agarwal A, Marks N, Wessel V, Willis D, Bai S, Tang X, Ward WL, Schellhase DE, Carroll JL. Improving knowledge, technical skills, and confidence among pediatric health care providers in the management of chronic tracheostomy using a simulation model. Pediatr Pulmonol. 2016 07; 51(7):696-704.
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Govindan RB, Massaro A, Chang T, Vezina G, du Plessis A. A novel technique for quantitative bedside monitoring of neurovascular coupling. J Neurosci Methods. 2016 Feb 01; 259:135-142.
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La Rosa PS, Brooks TL, Deych E, Shands B, Prior F, Larson-Prior LJ, Shannon WD. Gibbs distribution for statistical analysis of graphical data with a sample application to fcMRI brain images. Stat Med. 2016 Feb 20; 35(4):566-80.
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Thakkar S, Wang X, Khaidakov M, Dai Y, Gokulan K, Mehta JL, Varughese KI. Structure-based Design Targeted at LOX-1, a Receptor for Oxidized Low-Density Lipoprotein. Sci Rep. 2015 Nov 18; 5:16740.
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Foolad N, Prakash N, Shi VY, Kamangar F, Wang Q, Li CS, Sivamani RK. The use of facial modeling and analysis to objectively quantify facial redness. J Cosmet Dermatol. 2016 Mar; 15(1):43-8.
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Yan Q, Weeks DE, Celed?n JC, Tiwari HK, Li B, Wang X, Lin WY, Lou XY, Gao G, Chen W, Liu N. Associating Multivariate Quantitative Phenotypes with Genetic Variants in Family Samples with a Novel Kernel Machine Regression Method. Genetics. 2015 Dec; 201(4):1329-39.
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Lenin RB, Lowery CL, Hitt WC, Manning NA, Lowery P, Eswaran H. Optimizing appointment template and number of staff of an OB/GYN clinic--micro and macro simulation analyses. BMC Health Serv Res. 2015 Sep 16; 15:387.
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Bush K, Zhou S, Cisler J, Bian J, Hazaroglu O, Gillispie K, Yoshigoe K, Kilts C. A deconvolution-based approach to identifying large-scale effective connectivity. Magn Reson Imaging. 2015 Dec; 33(10):1290-1298.
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