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Se-Ran Jun

TitleAssistant Professor
InstitutionUniversity of Arkansas for Medical Sciences
DepartmentBiomedical Informatics, College of Medicine
Address501 Jack Stephens Drive
Mail Slot # 782
Little Rock AR 72205
Phone501-603-1766
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions. Don't see publications published under other names? Login to add alternative names.
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    1. Jenkins S, Vang K, Gies A, Griffin R, Jun SR, Nookaew I, Dings R. Sample storage conditions induce post-collection biases in microbiome profiles. BMC Microbiology. 2019.
    2. Wongsurawat T, Athipanyasilp N, Jenjaroenpun P, Jun SR, Kaewnapan B, Wassenaar TM, Leelahakorn N, Angkasekwinai N, Kantakamalakul W, Ussery DW, Sutthent R, Nookaew I, Horthongkham N. Case of Microcephaly after Congenital Infection with Asian Lineage Zika Virus, Thailand. Emerg Infect Dis. 2018 Sep; 24(9). PMID: 29985788.
      View in: PubMed
    3. Cabal A, Jun SR, Jenjaroenpun P, Wanchai V, Nookaew I, Wongsurawat T, Burgess MJ, Kothari A, Wassenaar TM, Ussery DW. Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes. Microb Ecol. 2018 Oct; 76(3):801-813. PMID: 29445826.
      View in: PubMed
    4. Timm CM, Carter KR, Carrell AA, Jun SR, Jawdy SS, Vélez JM, Gunter LE, Yang Z, Nookaew I, Engle NL, Lu TS, Schadt CW, Tschaplinski TJ, Doktycz MJ, Tuskan GA, Pelletier DA, Weston DJ. Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome. mSystems. 2018 Jan-Feb; 3(1). PMID: 29404422.
      View in: PubMed
    5. Jun SR, Wassenaar TM, Wanchai V, Patumcharoenpol P, Nookaew I, Ussery DW. Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us? BMC Bioinformatics. 2017 12 28; 18(Suppl 14):471. PMID: 29297281.
      View in: PubMed
    6. Alkam D, Wongsurawat T, Jenjaroenpun P, Connor S, Hobbs C, Wassenaar TM, Jun SR, Nookaew I, Ussery D. Three Complete Genome Sequences of Genotype G Mumps Virus from the 2016 Outbreak in Arkansas, USA. Genome Announc. 2017 Aug 10; 5(32). PMID: 28798162.
      View in: PubMed
    7. Jun SR, Nookaew I, Hauser L, Gorin A. Assessment of genome annotation using gene function similarity within the gene neighborhood. BMC Bioinformatics. 2017 Jul 19; 18(1):345. PMID: 28724412.
      View in: PubMed
    8. Linda J. Larson-Prior, Gohar Azhar, David G. Davila, Se-Ran Jun, Aaron S. Kemp, Intawat Nookaew, Jeanne Y. Wei, Trudy M. Wassenaar. Neurobiology of Sleep and Microbiomics in Aging. OBM Neurobiology. 2017; 1(2):doi:10.21926/obm.neurobiol.170.
    9. Trudy M. Wassenaar, Se-Ran Jun, Visanu Wanchai, Preecha Patumcharoenpol, Intawat Nookaew, Katrina Schlum, Michael R. Leuze, David W. Ussery. Insights from comparative genomics of the Genus Salmonella. Current Topics in Salmonella and Salmonellosis. 2017.
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    10. Zhang Q, Jun SR, Leuze M, Ussery D, Nookaew I. Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer. Sci Rep. 2017 01 19; 7:40712. PMID: 28102365.
      View in: PubMed
    11. Leekitcharoenphon P, Hendriksen RS, Le Hello S, Weill FX, Baggesen DL, Jun SR, Ussery DW, Lund O, Crook DW, Wilson DJ, Aarestrup FM. Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104. Appl Environ Microbiol. 2016 Apr; 82(8):2516-26. PMID: 26944846.
      View in: PubMed
    12. Jun SR, Wassenaar TM, Nookaew I, Hauser L, Wanchai V, Land M, Timm CM, Lu TYS, Schadt CW, Doktycz MJ, Pelletier DA, Ussery DW. Diversity of Pseudomonas genomes, including Populus-associated isolates, as revealed by comparative genome analysis. Applied and Environmental Microbiology. 2016; 82(1):375-383.
    13. Timm CM, Campbell AG, Utturkar SM, Jun SR, Parales RE, Tan WA, Robeson MS, Lu TY, Jawdy S, Brown SD, Ussery DW, Schadt CW, Tuskan GA, Doktycz MJ, Weston DJ, Pelletier DA. Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment. Front Microbiol. 2015; 6:1118. PMID: 26528266; PMCID: PMC4604316.
      View in: PubMed, PubMed Central
    14. Jun SR, Robeson MS, Hauser LJ, Schadt CW, Gorin AA. PanFP: pangenome-based functional profiles for microbial communities. BMC Res Notes. 2015 Sep 26; 8:479. PMID: 26409790; PMCID: PMC4584126.
      View in: PubMed, PubMed Central
    15. Jun SR, Leuze MR, Nookaew I, Uberbacher EC, Land M, Zhang Q, Wanchai V, Chai J, Nielsen M, Trolle T, Lund O, Buzard GS, Pedersen TD, Wassenaar TM, Ussery DW. Ebolavirus comparative genomics. FEMS Microbiol Rev. 2015 Sep; 39(5):764-78. PMID: 26175035; PMCID: PMC4551310.
      View in: PubMed, PubMed Central
    16. Land M, Hauser L, Jun SR, Nookaew I, Leuze MR, Ahn TH, Karpinets T, Lund O, Kora G, Wassenaar T, Poudel S, Ussery DW. Insights from 20 years of bacterial genome sequencing. Funct Integr Genomics. 2015 Mar; 15(2):141-61. PMID: 25722247; PMCID: PMC4361730.
      View in: PubMed, PubMed Central
    17. Land ML, Hyatt D, Jun SR, Kora GH, Hauser LJ, Lukjancenko O, Ussery DW. Quality scores for 32,000 genomes. Stand Genomic Sci. 2014; 9:20. PMID: 25780509; PMCID: PMC4334873.
      View in: PubMed, PubMed Central
    18. Jun SR, Sims GE, Wu GA, Kim SH. Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution. Proc Natl Acad Sci U S A. 2010 Jan 05; 107(1):133-8. PMID: 20018669; PMCID: PMC2806744.
      View in: PubMed, PubMed Central
    19. Sims GE, Jun SR, Wu GA, Kim SH. Whole-genome phylogeny of mammals: evolutionary information in genic and nongenic regions. Proc Natl Acad Sci U S A. 2009 Oct 06; 106(40):17077-82. PMID: 19805074; PMCID: PMC2761373.
      View in: PubMed, PubMed Central
    20. Wu GA, Jun SR, Sims GE, Kim SH. Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method. Proc Natl Acad Sci U S A. 2009 Aug 04; 106(31):12826-31. PMID: 19553209; PMCID: PMC2722272.
      View in: PubMed, PubMed Central
    21. Sims GE, Jun SR, Wu GA, Kim SH. Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions. Proc Natl Acad Sci U S A. 2009 Feb 24; 106(8):2677-82. PMID: 19188606; PMCID: PMC2634796.
      View in: PubMed, PubMed Central
    22. Se-Ran Jun, Sungkwon Kang, YoungHoon Kwon. A direct solver for the legendre tau approximation for the two-dimensional poisson problem . Journal of Applied Mathematics & Computing. 2007; 23(1-2):25-42.
    23. Hou J, Jun SR, Zhang C, Kim SH. Global mapping of the protein structure space and application in structure-based inference of protein function. Proc Natl Acad Sci U S A. 2005 Mar 08; 102(10):3651-6. PMID: 15705717; PMCID: PMC548596.
      View in: PubMed, PubMed Central
    24. Se-Ran Jun, Sung-Kwon Kang, and YongHoon Kwon. A spectral approximation scheme for the Stokes equations. Mathematical and Computer Modelling. 2004; 40:535-552.
    25. Se-Ran Jun, Sung-Kwon Kang, and YongHoon Kwon. Legendre Tau method for the 2-D Stokes problem. Journal of the Korean Society for Industrial and Applied Mathematics. 2000; 4:111-133.
    26. Se-Ran Jun, Sung-Kwon Kang, and YongHoon Kwon. A variational spectral method for the two-dimensional Stokes problem. Computers and Mathematics with Applications. 1998; 35(4):1-17.
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