 Yasir Rahmatallah
| Title | Assistant Professor |
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| Institution | University of Arkansas for Medical Sciences |
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| Department | Biomedical Informatics, College of Medicine |
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| Address | 412 Stephens Spine Center
501 Jack Stephens Drive
Mail Slot # 782
Little Rock AR 72205
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| Phone | 501-526-7814 |
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ORCID
.gif) | 0000-0002-8176-6328  |
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| vCard | Download vCard |
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| Associate Director, Arkansas INBRE Bioinformatics Research Support Core |
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 Affiliation International Society for Computational Biology (ISCB)
Institute of Electrical and Electronics Engineers (IEEE)
Biography | University of Arkansas for Medical Sciences, Little Rock, AR, USA | Postdoctoral Training | 06/2016 | Bioinformatics | | University of Arkansas at Little Rock, Little Rock, AR, USA | Postdoctoral Training | 10/2011 | Wireless Communications | | University of Arkansas at Little Rock, Little Rock, AR, USA | PhD | 12/2010 | Applied Sciences | | Al-Nahrain University, Baghdad, Iraq | MS | 12/2002 | Computer Engineering | | University of Baghdad, Baghdad, Iraq | BS | 07/2000 | Electronic & Communications Engineering |
| 2022 | TRI Research Day, best poster award for the category of Overall Content, University of Arkansas for Medical Sciences | | 2008 - 2010 | Harambee Outstanding Graduate Student Award, University of Arkansas at Little Rock | | 2006 | Donaghey College of Information Science and Systems Engineering GPA award, University of Arkansas at Little Rock | | 2002 | First Honors Award for high GPA in graduate program, Department of Computer Engineering, Al-Nahrain University | | 2000 | First Honors Award for high GPA in undergraduate program, Department of Electronics & Comm. Eng., University of Baghdad |
Teaching Research Barton Pilot Award (Yasir Rahmatallah)Jan 1, 2023 - Dec 31, 2023 UAMS COM
Phone-Collected Speech Corpus for Remote Assessment of Parkinson’s Disease
Role Description: This pilot study aims at establishing a speech database from people with Parkinson's disease and healthy participants. The study provides acoustical features and spectrogram images of a sustained vowel sound that could be used by machine learning methods to develop biomarkers for PD.
Role: Principle Investigator |
| OIA-1946391 (Yasir Rahmatallah)Sep 1, 2022 - Aug 31, 2024 NSF
Machine Learning Approaches for Remote Pathological Speech Assessment for Parkinson's Disease
Role Description: This seed research grant was funded by the DART project, sponsored by Arkansas's NSF EPSCOR program. The project will develop analysis pipelines to detect discriminative speech acoustic features between people with Parkinson's Disease and normal controls using voice recordings acquired via phone line.
Role: Principle Investigator |
| ONCB-008-19F (Henry Wong)Sep 1, 2021 - Aug 31, 2025 VA/CAVHS
Epigenetic Regulation of Differentially Expressed Genes in Cutaneous T Cell Lymphoma
Role Description: This VA funded Clinical Merit research project explores gene expression and DNA methylation patterns associated with cutaneous T-cell lymphoma in the Veterans population.
Role: Co-Investigator |
| P20GM121293 (Alan Tackett)Oct 1, 2017 - Sep 30, 2018 NIH/NIGMS
Integrating Gene Expression Profiles from Different Platforms into a Robust and Clinically Relevant Prognostic and Predictive Tool for Pediatric Leukemia
Role Description: This COBRE pilot project explores computational approaches to integrate RNA-seq and microarray expression profiles of unmatched samples to find expression signatures with clinical prognostic relevance to pediatric B-cell acute lymphoblastic leukemia and acute myeloid leukemia patients.
Role: Principle Investigator |
| P20GM121293 (ZYBAYLOV, BORIS)Jul 1, 2017 - Jun 30, 2022 NIH/National Institutes of Health - Pass Through: Arkansas Children's Hospital
Microbiome-Derived Therapeutic Targets for Chronic Kidney Disease - Continuation
Role: Co-Investigator |
| U01CA187013 (PRIOR, FRED WILLIAM)Sep 1, 2014 - Aug 31, 2020 NIH
Resources for development and validation of Radiomic analyses & Adaptive Therapy
Role: Co-Investigator |
| P20GM103429 (CORNETT, LAWRENCE E)Sep 30, 2001 - Apr 30, 2025 NIH
Partnerships for Biomedical Research in Arkansas
Role: Select |
Outreach Bibliographic The links below are provided by the researcher to provide access to external online bibliographies that they keep independently from the Profiles System.
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications.
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Jain N, Corken A, Arthur JM, Ware J, Arulprakash N, Dai J, Phadnis MA, Davis O, Rahmatallah Y, Mehta JL, Hedayati SS, Smyth S. Ticagrelor inhibits platelet aggregation and reduces inflammatory burden more than clopidogrel in patients with stages 4 or 5 chronic kidney disease. Vascul Pharmacol. 2023 Jan 20; 148:107143. PMID: 36682595.
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Corken A, Ware J, Dai J, Arthur JM, Smyth S, Davis CL, Liu J, Harville TO, Phadnis MA, Mehta JL, Rahmatallah Y, Jain N. Platelet-Dependent Inflammatory Dysregulation in Patients with Stages 4 or 5 Chronic Kidney Disease: A Mechanistic Clinical Study. Kidney360. 2022 12 29; 3(12):2036-2047. PMID: 36591354.
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Wiggins G, Thomas J, Rahmatallah Y, Deen C, Haynes A, Degon Z, Glazko G, Mukherjee A. Common gene expression patterns are observed in rice roots during associations with plant growth-promoting bacteria, Herbaspirillum seropedicae and Azospirillum brasilense. Sci Rep. 2022 05 25; 12(1):8827. PMID: 35614083.
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Cook J, Degon Z, Ruiz D, Pope J, Rahmatallah Y, Mukherjee A. The plant growth-promoting bacteria, Azospirillum brasilense, induce a diverse array of genes in rice shoots and promote their growth. Plant Growth Regulation. 2022; 97:143-155.
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Oliveira C, Shakiba E, North D, McGraw M, Ballard E, Barrett-D’Amico M, Glazko G, Rahmatallah Y. 16S rRNA Gene-Based Metagenomic Analysis of Rhizosphere Soil Bacteria in Arkansas Rice Crop Fields. Agronomy. 2022; 12(1):222.
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Rosa F, Zybailov BL, Glazko GV, Rahmatallah Y, Byrum S, Mackintosh SG, Bowlin AK, Yeruva L. Milk Formula Diet Alters Bacterial and Host Protein Profile in Comparison to Human Milk Diet in Neonatal Piglet Model. Nutrients. 2021 Oct 22; 13(11). PMID: 34835974.
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Karaduta O, Glazko G, Dvanajscak Z, Arthur J, Mackintosh S, Orr L, Rahmatallah Y, Yeruva L, Tackett A, Zybailov B. Resistant starch slows the progression of CKD in the 5/6 nephrectomy mouse model. Physiol Rep. 2020 10; 8(19):e14610. PMID: 33038060.
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Glazko G, Zybailov B, Emmert-Streib F, Baranova A, Rahmatallah Y. Proteome-transcriptome alignment of molecular portraits achieved by self-contained gene set analysis: Consensus colon cancer subtypes case study. PLoS One. 2019; 14(8):e0221444. PMID: 31437237.
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Mousavian Z, Nowzari-Dalini A, Rahmatallah Y, Masoudi-Nejad A. Differential network analysis and protein-protein interaction study reveals active protein modules in glucocorticoid resistance for infant acute lymphoblastic leukemia. Mol Med. 2019 08 01; 25(1):36. PMID: 31370801.
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Thomas J, Kim HR, Rahmatallah Y, Wiggins G, Yang Q, Singh R, Glazko G, Mukherjee A. RNA-seq reveals differentially expressed genes in rice (Oryza sativa) roots during interactions with plant-growth promoting bacteria, Azospirillum brasilense. PLoS One. 2019; 14(5):e0217309. PMID: 31120967.
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Zybailov BL, Glazko GV, Rahmatallah Y, Andreyev DS, McElroy T, Karaduta O, Byrum SD, Orr L, Tackett AJ, Mackintosh SG, Edmondson RD, Kieffer DA, Martin RJ, Adams SH, Vaziri ND, Arthur JM. Metaproteomics reveals potential mechanisms by which dietary resistant starch supplementation attenuates chronic kidney disease progression in rats. PLoS One. 2019; 14(1):e0199274. PMID: 30699108.
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Barham C, Fil D, Byrum SD, Rahmatallah Y, Glazko G, Kiaei M. RNA-Seq Analysis of Spinal Cord Tissues from hPFN1G118V Transgenic Mouse Model of ALS at Pre-symptomatic and End-Stages of Disease. Sci Rep. 2018 09 13; 8(1):13737. PMID: 30213953.
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Rahmatallah Y, Khaidakov M, Lai KK, Goyne HE, Lamps LW, Hagedorn CH, Glazko G. Platform-independent gene expression signature differentiates sessile serrated adenomas/polyps and hyperplastic polyps of the colon. BMC Med Genomics. 2017 12 28; 10(1):81. PMID: 29284484.
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MacNicol MC, Cragle CE, McDaniel FK, Hardy LL, Wang Y, Arumugam K, Rahmatallah Y, Glazko GV, Wilczynska A, Childs GV, Zhou D, MacNicol AM. Evasion of regulatory phosphorylation by an alternatively spliced isoform of Musashi2. Sci Rep. 2017 09 14; 7(1):11503. PMID: 28912529.
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Oliveira C, Gunderman L, Coles CA, Lochmann J, Parks M, Ballard E, Glazko G, Rahmatallah Y, Tackett AJ, Thomas DJ. 16S rRNA Gene-Based Metagenomic Analysis of Ozark Cave Bacteria. Diversity (Basel). 2017 Sep; 9(3). PMID: 29551950.
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Rahmatallah Y, Zybailov B, Emmert-Streib F, Glazko G. GSAR: Bioconductor package for Gene Set analysis in R. BMC Bioinformatics. 2017 Jan 24; 18(1):61. PMID: 28118818.
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Glazko G, Rahmatallah Y, Zybailov B, Emmert-Streib F. Extracting the Strongest Signals from Omics Data: Differentially Expressed Pathways and Beyond. Methods Mol Biol. 2017; 1613:125-159. PMID: 28849561.
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Mousavian Z, Nowzari-Dalini A, Stam RW, Rahmatallah Y, Masoudi-Nejad A. Network-based expression analysis reveals key genes related to glucocorticoid resistance in infant acute lymphoblastic leukemia. Cell Oncol (Dordr). 2017 Feb; 40(1):33-45. PMID: 27798768.
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Zybailov BL, Byrd AK, Glazko GV, Rahmatallah Y, Raney KD. Protein-protein interaction analysis for functional characterization of helicases. Methods. 2016 10 01; 108:56-64. PMID: 27090004.
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Rahmatallah Y, Emmert-Streib F, Glazko G. Gene set analysis approaches for RNA-seq data: performance evaluation and application guideline. Brief Bioinform. 2016 05; 17(3):393-407. PMID: 26342128.
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Rahmatallah Y, Emmert-Streib F, Glazko G. Comparative evaluation of gene set analysis approaches for RNA-Seq data. BMC Bioinformatics. 2014 Dec 05; 15:397. PMID: 25475910.
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Rahmatallah Y, Emmert-Streib F, Glazko G. Gene Sets Net Correlations Analysis (GSNCA): a multivariate differential coexpression test for gene sets. Bioinformatics. 2014 Feb 01; 30(3):360-8. PMID: 24292935.
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Yasir Rahmatallah, Nidhal Bouaynaya, and Seshadri Mohan. Bit error rate performance of companding transforms for OFDM. IEEE Transactions on Vehicular Technology. 2013; 62(8):4116-4120.
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Yasir Rahmatallah and Seshadri Mohan. Peak-to-average power ratio reduction in OFDM systems: A survey and taxonomy. IEEE Communication Surveys and Tutorials. 2013; 15(4):1567-1592.
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Rahmatallah Y, Emmert-Streib F, Glazko G. Gene set analysis for self-contained tests: complex null and specific alternative hypotheses. Bioinformatics. 2012 Dec 01; 28(23):3073-80. PMID: 23044539.
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Yasir Rahmatallah, Nidhal Bouaynaya, Seshadri Mohan. IEEE Global Telecommunications Conference (GLOBECOM). Bit error rate performance of linear companding transforms for PAPR reduction in OFDM systems. 2011; 1-5.
This graph shows the total number of publications by year, by first, middle/unknown, or last author.
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| Year | Publications |
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| 2011 | 1 | | 2012 | 1 | | 2013 | 3 | | 2014 | 1 | | 2015 | 1 | | 2016 | 2 | | 2017 | 5 | | 2018 | 1 | | 2019 | 4 | | 2020 | 1 | | 2021 | 1 | | 2022 | 4 | | 2023 | 1 |
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