Software
"Software" is a descriptor in the National Library of Medicine's controlled vocabulary thesaurus,
MeSH (Medical Subject Headings). Descriptors are arranged in a hierarchical structure,
which enables searching at various levels of specificity.
Sequential operating instructions for a particular problem or function to be run on a digital computer.
Descriptor ID |
D012984
|
MeSH Number(s) |
L01.224.900
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Concept/Terms |
Software- Software
- Computer Software
- Software, Computer
- Computer Programs
- Computer Program
- Program, Computer
- Programs, Computer
Software Tools- Software Tools
- Software Tool
- Tool, Software
- Tools, Software
|
Below are MeSH descriptors whose meaning is more general than "Software".
Below are MeSH descriptors whose meaning is more specific than "Software".
This graph shows the total number of publications written about "Software" by people in UAMS Profiles by year, and whether "Software" was a major or minor topic of these publications.
To see the data from this visualization as text, click here.
Year | Major Topic | Minor Topic | Total |
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2022 | 1 | 1 | 2 | 2021 | 2 | 4 | 6 | 2020 | 8 | 6 | 14 | 2019 | 5 | 2 | 7 | 2018 | 6 | 3 | 9 | 2017 | 6 | 3 | 9 | 2016 | 5 | 8 | 13 | 2015 | 4 | 5 | 9 | 2014 | 9 | 10 | 19 | 2013 | 6 | 9 | 15 | 2012 | 6 | 4 | 10 | 2011 | 2 | 5 | 7 | 2010 | 5 | 3 | 8 | 2009 | 2 | 4 | 6 | 2008 | 4 | 7 | 11 | 2007 | 5 | 6 | 11 | 2006 | 0 | 2 | 2 | 2005 | 0 | 3 | 3 | 2004 | 2 | 4 | 6 | 2003 | 0 | 2 | 2 | 2002 | 1 | 1 | 2 | 2001 | 0 | 2 | 2 | 2000 | 1 | 2 | 3 | 1999 | 0 | 1 | 1 | 1998 | 0 | 2 | 2 | 1996 | 0 | 1 | 1 | 1995 | 1 | 1 | 2 | 1994 | 0 | 1 | 1 | 1993 | 1 | 1 | 2 | 1992 | 0 | 3 | 3 | 1990 | 0 | 2 | 2 | 1988 | 0 | 1 | 1 |
To return to the timeline, click here.
Below are the most recent publications written about "Software" by people in Profiles over the past ten years.
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Bona JP, Utecht J, Bost S, Brochhausen M, Prior F. The PRISM semantic cohort builder: a novel tool to search and access clinical data in TCIA imaging collections. Phys Med Biol. 2022 Dec 23; 68(1).
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Shekar P V, Vignesh Rangaswamy V, Subramanian M, Atreya AR, Yalagudri S, Chennapragada S, Saggu DK, Narasimhan C. High rate episodes in a dual chamber pacemaker: What is the mechanism? Pacing Clin Electrophysiol. 2022 Feb; 45(2):238-240.
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Robeson MS, O'Rourke DR, Kaehler BD, Ziemski M, Dillon MR, Foster JT, Bokulich NA. RESCRIPt: Reproducible sequence taxonomy reference database management. PLoS Comput Biol. 2021 11; 17(11):e1009581.
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Jarugula P, Scott S, Ivaturi V, Noack A, Moffett BS, Bhutta A, Gobburu JVS. Understanding the Role of Pharmacometrics-Based Clinical Decision Support Systems in Pediatric Patient Management: A Case Study Using Lyv Software. J Clin Pharmacol. 2021 06; 61 Suppl 1:S125-S132.
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Siebert JC, Saint-Cyr M, Borengasser SJ, Wagner BD, Lozupone CA, Görg C. CANTARE: finding and visualizing network-based multi-omic predictive models. BMC Bioinformatics. 2021 Feb 19; 22(1):80.
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Wardell CP, Ashby C, Bauer MA. FiNGS: high quality somatic mutations using filters for next generation sequencing. BMC Bioinformatics. 2021 Feb 18; 22(1):77.
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Kulbeth HJ, Fukuda S, Brents LK. Automated quantification of opioid withdrawal in neonatal rat pups using Ethovision® XT software. Neurotoxicol Teratol. 2021 Mar-Apr; 84:106959.
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Jenjaroenpun P, Wongsurawat T, Wadley TD, Wassenaar TM, Liu J, Dai Q, Wanchai V, Akel NS, Jamshidi-Parsian A, Franco AT, Boysen G, Jennings ML, Ussery DW, He C, Nookaew I. Decoding the epitranscriptional landscape from native RNA sequences. Nucleic Acids Res. 2021 01 25; 49(2):e7.
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Yang X, Bian J, Hogan WR, Wu Y. Clinical concept extraction using transformers. J Am Med Inform Assoc. 2020 12 09; 27(12):1935-1942.
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Patel L, Shukla T, Huang X, Ussery DW, Wang S. Machine Learning Methods in Drug Discovery. Molecules. 2020 Nov 12; 25(22).
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Price NB, Chizinski CJ, Fontaine JJ, Pope KL, Rahe M, Rawlinson J. An open-sourced, web-based application to improve our ability to understand hunter and angler purchasing behavior from license data. PLoS One. 2020; 15(10):e0226397.
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Licon AL, Alexandrian A, Saenz D, Myers P, Rasmussen K, Stathakis S, Papanikolaou N, Kirby N. An open-source tool to visualize potential cone collisions while planning SRS cases. J Appl Clin Med Phys. 2020 Oct; 21(10):40-47.
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McCulloch J, Pawlowski J, Kirby N, Rasmussen K, Shi Z, Myers P, Stathakis S, Papanikolaou N, Saenz DL. Patient-specific dose quality assurance of single-isocenter multiple brain metastasis stereotactic radiosurgery using PTW Octavius 4D. J Appl Clin Med Phys. 2020 Sep; 21(9):107-115.
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Drew ED, Janes RW. PDBMD2CD: providing predicted protein circular dichroism spectra from multiple molecular dynamics-generated protein structures. Nucleic Acids Res. 2020 07 02; 48(W1):W17-W24.
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Eisenstein EL, Garza MY, Rocca M, Gordon GS, Zozus M. eSource-Enabled vs. Traditional Clinical Trial Data Collection Methods: A Site-Level Economic Analysis. Stud Health Technol Inform. 2020 Jun 16; 270:961-965.
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Smith AK, Ropella GEP, McGill MR, Krishnan P, Dutta L, Kennedy RC, Jaeschke H, Hunt CA. Contrasting model mechanisms of alanine aminotransferase (ALT) release from damaged and necrotic hepatocytes as an example of general biomarker mechanisms. PLoS Comput Biol. 2020 06; 16(6):e1007622.
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Botvinik-Nezer R, Holzmeister F, Camerer CF, Dreber A, Huber J, Johannesson M, Kirchler M, Iwanir R, Mumford JA, Adcock RA, Avesani P, Baczkowski BM, Bajracharya A, Bakst L, Ball S, Barilari M, Bault N, Beaton D, Beitner J, Benoit RG, Berkers RMWJ, Bhanji JP, Biswal BB, Bobadilla-Suarez S, Bortolini T, Bottenhorn KL, Bowring A, Braem S, Brooks HR, Brudner EG, Calderon CB, Camilleri JA, Castrellon JJ, Cecchetti L, Cieslik EC, Cole ZJ, Collignon O, Cox RW, Cunningham WA, Czoschke S, Dadi K, Davis CP, Luca A, Delgado MR, Demetriou L, Dennison JB, Di X, Dickie EW, Dobryakova E, Donnat CL, Dukart J, Duncan NW, Durnez J, Eed A, Eickhoff SB, Erhart A, Fontanesi L, Fricke GM, Fu S, Galván A, Gau R, Genon S, Glatard T, Glerean E, Goeman JJ, Golowin SAE, González-García C, Gorgolewski KJ, Grady CL, Green MA, Guassi Moreira JF, Guest O, Hakimi S, Hamilton JP, Hancock R, Handjaras G, Harry BB, Hawco C, Herholz P, Herman G, Heunis S, Hoffstaedter F, Hogeveen J, Holmes S, Hu CP, Huettel SA, Hughes ME, Iacovella V, Iordan AD, Isager PM, Isik AI, Jahn A, Johnson MR, Johnstone T, Joseph MJE, Juliano AC, Kable JW, Kassinopoulos M, Koba C, Kong XZ, Koscik TR, Kucukboyaci NE, Kuhl BA, Kupek S, Laird AR, Lamm C, Langner R, Lauharatanahirun N, Lee H, Lee S, Leemans A, Leo A, Lesage E, Li F, Li MYC, Lim PC, Lintz EN, Liphardt SW, Losecaat Vermeer AB, Love BC, Mack ML, Malpica N, Marins T, Maumet C, McDonald K, McGuire JT, Melero H, Méndez Leal AS, Meyer B, Meyer KN, Mihai G, Mitsis GD, Moll J, Nielson DM, Nilsonne G, Notter MP, Olivetti E, Onicas AI, Papale P, Patil KR, Peelle JE, Pérez A, Pischedda D, Poline JB, Prystauka Y, Ray S, Reuter-Lorenz PA, Reynolds RC, Ricciardi E, Rieck JR, Rodriguez-Thompson AM, Romyn A, Salo T, Samanez-Larkin GR, Sanz-Morales E, Schlichting ML, Schultz DH, Shen Q, Sheridan MA, Silvers JA, Skagerlund K, Smith A, Smith DV, Sokol-Hessner P, Steinkamp SR, Tashjian SM, Thirion B, Thorp JN, Tinghög G, Tisdall L, Tompson SH, Toro-Serey C, Torre Tresols JJ, Tozzi L, Truong V, Turella L, van 't Veer AE, Verguts T, Vettel JM, Vijayarajah S, Vo K, Wall MB, Weeda WD, Weis S, White DJ, Wisniewski D, Xifra-Porxas A, Yearling EA, Yoon S, Yuan R, Yuen KSL, Zhang L, Zhang X, Zosky JE, Nichols TE, Poldrack RA, Schonberg T. Variability in the analysis of a single neuroimaging dataset by many teams. Nature. 2020 06; 582(7810):84-88.
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Storey AJ, Naceanceno KS, Lan RS, Washam CL, Orr LM, Mackintosh SG, Tackett AJ, Edmondson RD, Wang Z, Li HY, Frett B, Kendrick S, Byrum SD. ProteoViz: a tool for the analysis and interactive visualization of phosphoproteomics data. Mol Omics. 2020 08 01; 16(4):316-326.
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Ashby C, Rutherford M, Bauer MA, Peterson EA, Wang Y, Boyle EM, Wardell CP, Walker BA. TarPan: an easily adaptable targeted sequencing panel viewer for research and clinical use. BMC Bioinformatics. 2020 Apr 15; 21(1):144.
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Soong D, Stratford J, Avet-Loiseau H, Bahlis N, Davies F, Dispenzieri A, Sasser AK, Schecter JM, Qi M, Brown C, Jones W, Keats JJ, Auclair D, Chiu C, Powers J, Schaffer M. CNV Radar: an improved method for somatic copy number alteration characterization in oncology. BMC Bioinformatics. 2020 Mar 06; 21(1):98.
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Zhang Y, Koru G. Understanding and detecting defects in healthcare administration data: Toward higher data quality to better support healthcare operations and decisions. J Am Med Inform Assoc. 2020 03 01; 27(3):386-395.
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Caputo M, Lyles JT, Salazar MS, Quave CL. LEGO MINDSTORMS Fraction Collector: A Low-Cost Tool for a Preparative High-Performance Liquid Chromatography System. Anal Chem. 2020 01 21; 92(2):1687-1690.
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Cooke MB, O'Leary TP, Harris P, Ma R, Brown RE, Snyder JS. Pathfinder: open source software for analyzing spatial navigation search strategies. F1000Res. 2019; 8:1521.
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He X, Zhang R, Rizvi R, Vasilakes J, Yang X, Guo Y, He Z, Prosperi M, Huo J, Alpert J, Bian J. ALOHA: developing an interactive graph-based visualization for dietary supplement knowledge graph through user-centered design. BMC Med Inform Decis Mak. 2019 08 08; 19(Suppl 4):150.
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Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019 08; 37(8):852-857.
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Drew ED, Janes RW. 2StrucCompare: a webserver for visualizing small but noteworthy differences between protein tertiary structures through interrogation of the secondary structure content. Nucleic Acids Res. 2019 07 02; 47(W1):W477-W481.
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Bathla G, Limaye K, Policeni B, Klotz E, Juergens M, Derdeyn C. Achieving comparable perfusion results across vendors. The next step in standardizing stroke care: a technical report. J Neurointerv Surg. 2019 Dec; 11(12):1257-1260.
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Long DE, Villasante Tezanos AG, Wise JN, Kern PA, Bamman MM, Peterson CA, Dennis RA. A guide for using NIH Image J for single slice cross-sectional area and composition analysis of the thigh from computed tomography. PLoS One. 2019; 14(2):e0211629.
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Kabat CN, Defoor DL, Myers P, Kirby N, Rasmussen K, Saenz DL, Mavroidis P, Papanikolaou N, Stathakis S. Evaluation of the Elekta Agility MLC performance using high-resolution log files. Med Phys. 2019 Mar; 46(3):1397-1407.
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Lossio-Ventura JA, Hogan W, Modave F, Guo Y, He Z, Yang X, Zhang H, Bian J. OC-2-KB: integrating crowdsourcing into an obesity and cancer knowledge base curation system. BMC Med Inform Decis Mak. 2018 07 23; 18(Suppl 2):55.
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Causey JL, Zhang J, Ma S, Jiang B, Qualls JA, Politte DG, Prior F, Zhang S, Huang X. Highly accurate model for prediction of lung nodule malignancy with CT scans. Sci Rep. 2018 06 18; 8(1):9286.
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McCarty JL, Golofit P, Tigges S, Skalski M. Digital Medical Illustration for the Radiologist. Radiographics. 2018 Jul-Aug; 38(4):1145-1157.
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Ramaker RC, Gordon ER, Cooper SJ. R2DGC: threshold-free peak alignment and identification for 2D gas chromatography-mass spectrometry in R. Bioinformatics. 2018 05 15; 34(10):1789-1791.
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Causey JL, Ashby C, Walker K, Wang ZP, Yang M, Guan Y, Moore JH, Huang X. DNAp: A Pipeline for DNA-seq Data Analysis. Sci Rep. 2018 05 01; 8(1):6793.
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Piccolo BD, Wankhade UD, Chintapalli SV, Bhattacharyya S, Chunqiao L, Shankar K. Dynamic assessment of microbial ecology (DAME): a web app for interactive analysis and visualization of microbial sequencing data. Bioinformatics. 2018 03 15; 34(6):1050-1052.
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Bona JP, Ceusters W. Mismatches between major subhierarchies and semantic tags in SNOMED CT. J Biomed Inform. 2018 05; 81:1-15.
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Tuazon B, Narayanasamy G, Papanikolaou N, Kirby N, Mavroidis P, Stathakis S. Evaluation and comparison of second-check monitor unit calculation software with Pinnacle3 treatment planning system. Phys Med. 2018 Jan; 45:186-191.
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McConnell KA, Marston T, Zehren BE, Lirani A, Stanley DN, Bishop A, Crownover R, Eng T, Shi Z, Li Y, Baacke D, Kirby N, Rasmussen K, Papanikolaou N, Gutierrez AN. Dosimetric Evaluation of Pinnacle's Automated Treatment Planning Software to Manually Planned Treatments. Technol Cancer Res Treat. 2018 01 01; 17:1533033818780064.
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Wen Y, Murach KA, Vechetti IJ, Fry CS, Vickery C, Peterson CA, McCarthy JJ, Campbell KS. MyoVision: software for automated high-content analysis of skeletal muscle immunohistochemistry. J Appl Physiol (1985). 2018 01 01; 124(1):40-51.
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Dobretsov M, Petkau G, Hayar A, Petkau E. Clock Scan Protocol for Image Analysis: ImageJ Plugins. J Vis Exp. 2017 06 19; (124).
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Alonso A, Lasseigne BN, Williams K, Nielsen J, Ramaker RC, Hardigan AA, Johnston B, Roberts BS, Cooper SJ, Marsal S, Myers RM. aRNApipe: a balanced, efficient and distributed pipeline for processing RNA-seq data in high-performance computing environments. Bioinformatics. 2017 Jun 01; 33(11):1727-1729.
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Scanlon DP, Bah A, Krzeminski M, Zhang W, Leduc-Pessah HL, Dong YN, Forman-Kay JD, Salter MW. An evolutionary switch in ND2 enables Src kinase regulation of NMDA receptors. Nat Commun. 2017 05 16; 8:15220.
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Pedersen TL, Nookaew I, Wayne Ussery D, Månsson M. PanViz: interactive visualization of the structure of functionally annotated pangenomes. Bioinformatics. 2017 04 01; 33(7):1081-1082.
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Thankaswamy-Kosalai S, Sen P, Nookaew I. Evaluation and assessment of read-mapping by multiple next-generation sequencing aligners based on genome-wide characteristics. Genomics. 2017 07; 109(3-4):186-191.
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Hogan WR, Hanna J, Hicks A, Amirova S, Bramblett B, Diller M, Enderez R, Modzelewski T, Vasconcelos M, Delcher C. Therapeutic indications and other use-case-driven updates in the drug ontology: anti-malarials, anti-hypertensives, opioid analgesics, and a large term request. J Biomed Semantics. 2017 Mar 03; 8(1):10.
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Dinsdale G, Moore T, O'Leary N, Tresadern P, Berks M, Roberts C, Manning J, Allen J, Anderson M, Cutolo M, Hesselstrand R, Howell K, Pizzorni C, Smith V, Sulli A, Wildt M, Taylor C, Murray A, Herrick AL. Intra-and inter-observer reliability of nailfold videocapillaroscopy - A possible outcome measure for systemic sclerosis-related microangiopathy. Microvasc Res. 2017 07; 112:1-6.
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Rahmatallah Y, Zybailov B, Emmert-Streib F, Glazko G. GSAR: Bioconductor package for Gene Set analysis in R. BMC Bioinformatics. 2017 Jan 24; 18(1):61.
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Pandey T, Alapati S, Wadhwa V, Edupuganti MM, Gurram P, Lensing S, Jambhekar K. Evaluation of Myocardial Strain in Patients With Amyloidosis Using Cardiac Magnetic Resonance Feature Tracking. Curr Probl Diagn Radiol. 2017 Jul - Aug; 46(4):288-294.
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Zheng J, Erzurumluoglu AM, Elsworth BL, Kemp JP, Howe L, Haycock PC, Hemani G, Tansey K, Laurin C, Pourcain BS, Warrington NM, Finucane HK, Price AL, Bulik-Sullivan BK, Anttila V, Paternoster L, Gaunt TR, Evans DM, Neale BM. LD Hub: a centralized database and web interface to perform LD score regression that maximizes the potential of summary level GWAS data for SNP heritability and genetic correlation analysis. Bioinformatics. 2017 01 15; 33(2):272-279.
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Mavridis L, Janes RW. PDB2CD: a web-based application for the generation of circular dichroism spectra from protein atomic coordinates. Bioinformatics. 2017 01 01; 33(1):56-63.
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Whitmore L, Miles AJ, Mavridis L, Janes RW, Wallace BA. PCDDB: new developments at the Protein Circular Dichroism Data Bank. Nucleic Acids Res. 2017 01 04; 45(D1):D303-D307.
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Hogan WR, Wagner MM, Brochhausen M, Levander J, Brown ST, Millett N, DePasse J, Hanna J. The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation. J Biomed Semantics. 2016 Aug 18; 7:50.
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Kirkwood ML, Guild JB, Arbique GM, Tsai S, Modrall JG, Anderson JA, Rectenwald J, Timaran C. New image-processing and noise-reduction software reduces radiation dose during complex endovascular procedures. J Vasc Surg. 2016 Nov; 64(5):1357-1365.
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Stupnikov A, Tripathi S, de Matos Simoes R, McArt D, Salto-Tellez M, Glazko G, Dehmer M, Emmert-Streib F. samExploreR: exploring reproducibility and robustness of RNA-seq results based on SAM files. Bioinformatics. 2016 11 01; 32(21):3345-3347.
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Gillies CE, Otto EA, Vega-Warner V, Robertson CC, Sanna-Cherchi S, Gharavi A, Crawford B, Bhimma R, Winkler C, Kang HM, Sampson MG. tarSVM: Improving the accuracy of variant calls derived from microfluidic PCR-based targeted next generation sequencing using a support vector machine. BMC Bioinformatics. 2016 Jun 10; 17(1):233.
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Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, Clancy K, Courtot M, Derom D, Dumontier M, Fan L, Fostel J, Fragoso G, Gibson F, Gonzalez-Beltran A, Haendel MA, He Y, Heiskanen M, Hernandez-Boussard T, Jensen M, Lin Y, Lister AL, Lord P, Malone J, Manduchi E, McGee M, Morrison N, Overton JA, Parkinson H, Peters B, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Schober D, Smith B, Soldatova LN, Stoeckert CJ, Taylor CF, Torniai C, Turner JA, Vita R, Whetzel PL, Zheng J. The Ontology for Biomedical Investigations. PLoS One. 2016; 11(4):e0154556.
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Shibata A, Okuno T, Rahman MA, Azuma Y, Takeda J, Masuda A, Selcen D, Engel AG, Ohno K. IntSplice: prediction of the splicing consequences of intronic single-nucleotide variations in the human genome. J Hum Genet. 2016 Jul; 61(7):633-40.
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Pokhrel D, McClinton C, Sood S, Badkul R, Saleh H, Jiang H, Lominska C. Monte Carlo evaluation of tissue heterogeneities corrections in the treatment of head and neck cancer patients using stereotactic radiotherapy. J Appl Clin Med Phys. 2016 03 08; 17(2):258-270.
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Iadanza MG, Jackson MP, Radford SE, Ranson NA. MpUL-multi: Software for Calculation of Amyloid Fibril Mass per Unit Length from TB-TEM Images. Sci Rep. 2016 Feb 12; 6:21078.
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Zhang X, Penagaricano J, Yan Y, Liang X, Morrill S, Griffin RJ, Corry P, Ratanatharathorn V. Spatially fractionated radiotherapy (GRID) using helical tomotherapy. J Appl Clin Med Phys. 2016 01 08; 17(1):396-407.
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Leroux S, Turner MA, Guellec CB, Hill H, van den Anker JN, Kearns GL, Jacqz-Aigrain E, Zhao W. Pharmacokinetic Studies in Neonates: The Utility of an Opportunistic Sampling Design. Clin Pharmacokinet. 2015 Dec; 54(12):1273-85.
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La Rosa PS, Brooks TL, Deych E, Shands B, Prior F, Larson-Prior LJ, Shannon WD. Gibbs distribution for statistical analysis of graphical data with a sample application to fcMRI brain images. Stat Med. 2016 Feb 20; 35(4):566-80.
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Choudhri AF, Chatterjee AR, Javan R, Radvany MG, Shih G. Security Issues for Mobile Medical Imaging: A Primer. Radiographics. 2015 Oct; 35(6):1814-24.
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Narayanasamy G, Zalman T, Ha CS, Papanikolaou N, Stathakis S. Evaluation of Dosimetry Check software for IMRT patient-specific quality assurance. J Appl Clin Med Phys. 2015 May 08; 16(3):5427.
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Moore SM, Maffitt DR, Smith KE, Kirby JS, Clark KW, Freymann JB, Vendt BA, Tarbox LR, Prior FW. De-identification of Medical Images with Retention of Scientific Research Value. Radiographics. 2015 May-Jun; 35(3):727-35.
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He Y, Zhang F, Flaherty P. RVD2: an ultra-sensitive variant detection model for low-depth heterogeneous next-generation sequencing data. Bioinformatics. 2015 Sep 01; 31(17):2785-93.
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Jenjaroenpun P, Wongsurawat T, Yenamandra SP, Kuznetsov VA. QmRLFS-finder: a model, web server and stand-alone tool for prediction and analysis of R-loop forming sequences. Nucleic Acids Res. 2015 Jul 01; 43(W1):W527-34.
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Beck ME, Lineer MM, Melzer-Lange M, Simpson P, Nugent M, Rabbitt A. Medical providers' understanding of sex trafficking and their experience with at-risk patients. Pediatrics. 2015 Apr; 135(4):e895-902.
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Chang Z, Li G, Liu J, Zhang Y, Ashby C, Liu D, Cramer CL, Huang X. Bridger: a new framework for de novo transcriptome assembly using RNA-seq data. Genome Biol. 2015 Feb 11; 16:30.
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Sinh P, Gupta N, Rao DS, Wani S, Sharma P, Bansal A, Allen J, Ketover SR, Rastogi A. Community gastroenterologists can learn diminutive colon polyp histology characterization with narrow band imaging by a computer-based teaching module. Dig Endosc. 2015 Mar; 27(3):374-80.
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Rahmatallah Y, Emmert-Streib F, Glazko G. Comparative evaluation of gene set analysis approaches for RNA-Seq data. BMC Bioinformatics. 2014 Dec 05; 15:397.
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Bian J, Xie M, Hudson TJ, Eswaran H, Brochhausen M, Hanna J, Hogan WR. CollaborationViz: interactive visual exploration of biomedical research collaboration networks. PLoS One. 2014; 9(11):e111928.
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Stanley DN, Papanikolaou N, Gutiérrez AN. Development of image quality assurance measures of the ExacTrac localization system using commercially available image evaluation software and hardware for image-guided radiotherapy. J Appl Clin Med Phys. 2014 Nov 08; 15(6):4877.
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Qi T, Cao Y, Cao L, Gao Y, Zhu S, Lou X, Xu H. Dissecting genetic architecture underlying seed traits in multiple environments. Genetics. 2015 Jan; 199(1):61-71.
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Peterson EA, Chavan SS, Bauer MA, Heuck CJ, Johann DJ. Revealing the inherent heterogeneity of human malignancies by variant consensus strategies coupled with cancer clonal analysis. BMC Bioinformatics. 2014; 15 Suppl 11:S9.
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Jaiswal M, Crabtree N, Bauer MA, Hall R, Raney KD, Zybailov BL. XLPM: efficient algorithm for the analysis of protein-protein contacts using chemical cross-linking mass spectrometry. BMC Bioinformatics. 2014; 15 Suppl 11:S16.
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Bauer MA, Chavan SS, Peterson EA, Heuck CJ, Johann DJ. Leveraging the new with the old: providing a framework for the integration of historic microarray studies with next generation sequencing. BMC Bioinformatics. 2014; 15 Suppl 11:S3.
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Fang N, Yu S, Ronis MJ, Badger TM. Matrix effects break the LC behavior rule for analytes in LC-MS/MS analysis of biological samples. Exp Biol Med (Maywood). 2015 Apr; 240(4):488-97.
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Saddiki H, McAuliffe J, Flaherty P. GLAD: a mixed-membership model for heterogeneous tumor subtype classification. Bioinformatics. 2015 Jan 15; 31(2):225-32.
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Nelson MR, Sutton KJ, Brook BS, Mallet DG, Simpson DP, Rank RG. STI-GMaS: an open-source environment for simulation of sexually-transmitted infections. BMC Syst Biol. 2014 Jun 12; 8:66.
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Garcia-Albornoz M, Thankaswamy-Kosalai S, Nilsson A, Väremo L, Nookaew I, Nielsen J. BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data. Nucleic Acids Res. 2014 Jul; 42(Web Server issue):W175-81.
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Li G, Li M, Zhang Y, Wang D, Li R, Guimerà R, Gao JT, Zhang MQ. ModuleRole: a tool for modulization, role determination and visualization in protein-protein interaction networks. PLoS One. 2014; 9(5):e94608.
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Bian J, Xie M, Hogan W, Hutchins L, Topaloglu U, Lane C, Holland J, Wells T. CLARA: an integrated clinical research administration system. J Am Med Inform Assoc. 2014 Oct; 21(e2):e369-73.
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Lee DC, Budney AJ, Brunette MF, Hughes JR, Etter JF, Stanger C. Treatment models for targeting tobacco use during treatment for cannabis use disorder: case series. Addict Behav. 2014 Aug; 39(8):1224-30.
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Lackey AE, Moshiri M, Pandey T, Lall C, Lalwani N, Bhargava P. Productivity, part 1: getting things done, using e-mail, scanners, reference managers, note-taking applications, and text expanders. J Am Coll Radiol. 2014 May; 11(5):481-9.
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Park JM, Yi TK, Koak JY, Kim SK, Park EJ, Heo SJ. Comparison of five-axis milling and rapid prototyping for implant surgical templates. Int J Oral Maxillofac Implants. 2014 Mar-Apr; 29(2):374-83.
-
Fowler SA, Yaeger LH, Yu F, Doerhoff D, Schoening P, Kelly B. Electronic health record: integrating evidence-based information at the point of clinical decision making. J Med Libr Assoc. 2014 Jan; 102(1):52-5.
-
Li Y, Xie M, Bian J. USign--a security enhanced electronic consent model. Annu Int Conf IEEE Eng Med Biol Soc. 2014; 2014:4487-90.
-
Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): maintaining and operating a public information repository. J Digit Imaging. 2013 Dec; 26(6):1045-57.
-
Wagner MM, Levander JD, Brown S, Hogan WR, Millett N, Hanna J. Apollo: giving application developers a single point of access to public health models using structured vocabularies and Web services. AMIA Annu Symp Proc. 2013; 2013:1415-24.
-
McDonald JE, Kessler MM, Hightower JL, Henry SD, Deloney LA. Server-based enterprise collaboration software improves safety and quality in high-volume PET/CT practice. J Nucl Med Technol. 2013 Dec; 41(4):289-91.
-
Griffith M, Griffith OL, Coffman AC, Weible JV, McMichael JF, Spies NC, Koval J, Das I, Callaway MB, Eldred JM, Miller CA, Subramanian J, Govindan R, Kumar RD, Bose R, Ding L, Walker JR, Larson DE, Dooling DJ, Smith SM, Ley TJ, Mardis ER, Wilson RK. DGIdb: mining the druggable genome. Nat Methods. 2013 Dec; 10(12):1209-10.
-
Vazquez Quino LA, Chen X, Fitzpatrick M, Shi C, Stathakis S, Gutierrez A, Esquivel C, Mavroidis P, Alkhatib H, Papanikolaou N. Patient specific pre-treatment QA verification using an EPID approach. Technol Cancer Res Treat. 2014 Feb; 13(1):1-10.
-
Woollett B, Whitmore L, Janes RW, Wallace BA. ValiDichro: a website for validating and quality control of protein circular dichroism spectra. Nucleic Acids Res. 2013 Jul; 41(Web Server issue):W417-21.
-
Segal MM, Williams MS, Gropman AL, Torres AR, Forsyth R, Connolly AM, El-Hattab AW, Perlman SJ, Samanta D, Parikh S, Pavlakis SG, Feldman LK, Betensky RA, Gospe SM. Evidence-based decision support for neurological diagnosis reduces errors and unnecessary workup. J Child Neurol. 2014 Apr; 29(4):487-92.
-
Vesth T, Lagesen K, Acar Ö, Ussery D. CMG-biotools, a free workbench for basic comparative microbial genomics. PLoS One. 2013; 8(4):e60120.
-
Roy A, Taddese B, Vohra S, Thimmaraju PK, Illingworth CJ, Simpson LM, Mukherjee K, Reynolds CA, Chintapalli SV. Identifying subset errors in multiple sequence alignments. J Biomol Struct Dyn. 2014; 32(3):364-71.
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