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Galina Glazko

TitleAssistant Professor
InstitutionUniversity of Arkansas for Medical Sciences
DepartmentBiomedical Informatics, College of Medicine
Address468 Stephens Spine Center
501 Jack Stephens Drive
Mail Slot # 782
Little Rock AR 72205
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions. Don't see publications published under other names? Login to add alternative names.
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    1. Musa A, Ghoraie LS, Zhang SD, Glazko G, Yli-Harja O, Dehmer M, Haibe-Kains B, Emmert-Streib F. A review of connectivity map and computational approaches in pharmacogenomics. Brief Bioinform. 2018 May 01; 19(3):506-523. PMID: 28069634.
      View in: PubMed
    2. Rahmatallah Y, Khaidakov M, Lai KK, Goyne HE, Lamps LW, Hagedorn CH, Glazko G. Platform-independent gene expression signature differentiates sessile serrated adenomas/polyps and hyperplastic polyps of the colon. BMC Med Genomics. 2017 Dec 28; 10(1):81. PMID: 29284484.
      View in: PubMed
    3. MacNicol MC, Cragle CE, McDaniel FK, Hardy LL, Wang Y, Arumugam K, Rahmatallah Y, Glazko GV, Wilczynska A, Childs GV, Zhou D, MacNicol AM. Evasion of regulatory phosphorylation by an alternatively spliced isoform of Musashi2. Sci Rep. 2017 Sep 14; 7(1):11503. PMID: 28912529.
      View in: PubMed
    4. Musa A, Ghoraie LS, Zhang SD, Glazko G, Yli-Harja O, Dehmer M, Haibe-Kains B, Emmert-Streib F. A review of connectivity map and computational approaches in pharmacogenomics. Brief Bioinform. 2017 09 01; 18(5):903. PMID: 28334173.
      View in: PubMed
    5. Oliveira C, Gunderman L, Coles CA, Lochmann J, Parks M, Ballard E, Glazko G, Rahmatallah Y, Tackett AJ, Thomas DJ. 16S rRNA Gene-Based Metagenomic Analysis of Ozark Cave Bacteria. Diversity (Basel). 2017 Sep; 9(3). PMID: 29551950.
      View in: PubMed
    6. Rahmatallah Y, Zybailov B, Emmert-Streib F, Glazko G. GSAR: Bioconductor package for Gene Set analysis in R. BMC Bioinformatics. 2017 Jan 24; 18(1):61. PMID: 28118818.
      View in: PubMed
    7. Glazko G, Rahmatallah Y, Zybailov B, Emmert-Streib F. Extracting the Strongest Signals from Omics Data: Differentially Expressed Pathways and Beyond. Methods Mol Biol. 2017; 1613:125-159. PMID: 28849561.
      View in: PubMed
    8. Chernikova D, Managadze D, Glazko GV, Makalowski W, Rogozin IB. Conservation of the Exon-Intron Structure of Long Intergenic Non-Coding RNA Genes in Eutherian Mammals. Life (Basel). 2016 Jul 15; 6(3). PMID: 27429005.
      View in: PubMed
    9. Stupnikov A, Tripathi S, de Matos Simoes R, McArt D, Salto-Tellez M, Glazko G, Dehmer M, Emmert-Streib F. samExploreR: exploring reproducibility and robustness of RNA-seq results based on SAM files. Bioinformatics. 2016 11 01; 32(21):3345-3347. PMID: 27402900.
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    10. Zybailov BL, Byrd AK, Glazko GV, Rahmatallah Y, Raney KD. Protein-protein interaction analysis for functional characterization of helicases. Methods. 2016 10 01; 108:56-64. PMID: 27090004.
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    11. Zybailov B, Gokulan K, Wiese J, Ramanagoudr-Bhojappa R, Byrd AK, Glazko G, Jaiswal M, Mackintosh S, Varughese KI, Raney KD. Analysis of Protein-protein Interaction Interface between Yeast Mitochondrial Proteins Rim1 and Pif1 Using Chemical Cross-linking Mass Spectrometry. J Proteomics Bioinform. 2015 Nov; 8(11):243-252. PMID: 26807012.
      View in: PubMed
    12. Rahmatallah Y, Emmert-Streib F, Glazko G. Gene set analysis approaches for RNA-seq data: performance evaluation and application guideline. Brief Bioinform. 2016 05; 17(3):393-407. PMID: 26342128.
      View in: PubMed
    13. Stupnikov A, Glazko GV, Emmert-Streib F. Effects of subsampling on characteristics of RNA-seq data from triple-negative breast cancer patients. Chin J Cancer. 2015 Aug 08; 34(10):427-38. PMID: 26253000; PMCID: PMC4593382.
    14. Rahmatallah Y, Emmert-Streib F, Glazko G. Comparative evaluation of gene set analysis approaches for RNA-Seq data. BMC Bioinformatics. 2014 Dec 05; 15:397. PMID: 25475910; PMCID: PMC4265362.
    15. Emmert-Streib F, de Matos Simoes R, Glazko G, McDade S, Haibe-Kains B, Holzinger A, Dehmer M, Campbell F. Functional and genetic analysis of the colon cancer network. BMC Bioinformatics. 2014; 15 Suppl 6:S6. PMID: 25079297; PMCID: PMC4158620.
    16. Rahmatallah Y, Emmert-Streib F, Glazko G. Gene Sets Net Correlations Analysis (GSNCA): a multivariate differential coexpression test for gene sets. Bioinformatics. 2014 Feb 01; 30(3):360-8. PMID: 24292935; PMCID: PMC4023302.
    17. Gao J, Wagnon JL, Protacio RM, Glazko GV, Beggs M, Raj V, Davidson MK, Wahls WP. A stress-activated, p38 mitogen-activated protein kinase-ATF/CREB pathway regulates posttranscriptional, sequence-dependent decay of target RNAs. Mol Cell Biol. 2013 Aug; 33(15):3026-35. PMID: 23732911; PMCID: PMC3719685.
    18. Zybailov BL, Glazko GV, Jaiswal M, Raney KD. Large Scale Chemical Cross-linking Mass Spectrometry Perspectives. J Proteomics Bioinform. 2013 Feb 08; 6(Suppl 2):001. PMID: 25045217.
      View in: PubMed
    19. Tripathi S, Glazko GV, Emmert-Streib F. Ensuring the statistical soundness of competitive gene set approaches: gene filtering and genome-scale coverage are essential. Nucleic Acids Res. 2013 Apr; 41(7):e82. PMID: 23389952; PMCID: PMC3627569.
    20. Smolock EM, Korshunov VA, Glazko G, Qiu X, Gerloff J, Berk BC. Ribosomal protein L17, RpL17, is an inhibitor of vascular smooth muscle growth and carotid intima formation. Circulation. 2012 Nov 13; 126(20):2418-27. PMID: 23065385; PMCID: PMC3502943.
    21. Glazko GV, Zybailov BL, Rogozin IB. Computational prediction of polycomb-associated long non-coding RNAs. PLoS One. 2012; 7(9):e44878. PMID: 23028655; PMCID: PMC3441527.
    22. Emmert-Streib F, de Matos Simoes R, Tripathi S, Glazko GV, Dehmer M. A Bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data. Sci Rep. 2012; 2:513. PMID: 22822426; PMCID: PMC3400933.
    23. Yampolsky LY, Glazko GV, Fry JD. Evolution of gene expression and expression plasticity in long-term experimental populations of Drosophila melanogaster maintained under constant and variable ethanol stress. Mol Ecol. 2012 Sep; 21(17):4287-99. PMID: 22774776; PMCID: PMC3654693.
    24. Emmert-Streib F, Glazko GV, Altay G, de Matos Simoes R. Statistical inference and reverse engineering of gene regulatory networks from observational expression data. Front Genet. 2012; 3:8. PMID: 22408642; PMCID: PMC3271232.
    25. Emmert-Streib F, Glazko GV. Pathway analysis of expression data: deciphering functional building blocks of complex diseases. PLoS Comput Biol. 2011 May; 7(5):e1002053. PMID: 21637797; PMCID: PMC3102754.
    26. Emmert-Streib F, Glazko GV. Network biology: a direct approach to study biological function. Wiley Interdiscip Rev Syst Biol Med. 2011 Jul-Aug; 3(4):379-91. PMID: 21197659.
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    27. Glazko G, Mushegian A. Measuring gene expression divergence: the distance to keep. Biol Direct. 2010 Aug 06; 5:51. PMID: 20691088; PMCID: PMC2928186.
    28. Hu R, Qiu X, Glazko G. A new gene selection procedure based on the covariance distance. Bioinformatics. 2010 Feb 01; 26(3):348-54. PMID: 19996162; PMCID: PMC2815661.
    29. Glazko GV, Emmert-Streib F. Unite and conquer: univariate and multivariate approaches for finding differentially expressed gene sets. Bioinformatics. 2009 Sep 15; 25(18):2348-54. PMID: 19574285; PMCID: PMC2735665.
    30. Gordon A, Chen L, Glazko G, Yakovlev A. Balancing Type One and Two Errors in Multiple Testing for Differential Expression of Genes. Comput Stat Data Anal. 2009 Mar 15; 53(5):1622-1629. PMID: 20161303.
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    31. Gordon A, Chen L, Glazko G, Yakovlev A. Balancing Type One and Two Errors in Multiple Testing for Differential Expression of Genes. Comput Stat Data Anal. 2009; 53(5):1622-1629.
    32. Hu R, Qiu X, Glazko G, Klebanov L, Yakovlev A. Detecting intergene correlation changes in microarray analysis: a new approach to gene selection. BMC Bioinformatics. 2009 Jan 15; 10:20. PMID: 19146700; PMCID: PMC2657217.
    33. Hanin L, Awadalla SS, Cox P, Glazko G, Yakovlev A. Chromosome-specific spatial periodicities in gene expression revealed by spectral analysis. J Theor Biol. 2009 Feb 07; 256(3):333-42. PMID: 19014953.
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    34. Minakhin L, Goel M, Berdygulova Z, Ramanculov E, Florens L, Glazko G, Karamychev VN, Slesarev AI, Kozyavkin SA, Khromov I, Ackermann HW, Washburn M, Mushegian A, Severinov K. Genome comparison and proteomic characterization of Thermus thermophilus bacteriophages P23-45 and P74-26: siphoviruses with triplex-forming sequences and the longest known tails. J Mol Biol. 2008 Apr 25; 378(2):468-80. PMID: 18355836; PMCID: PMC2440725.
    35. Glazko G, Makarenkov V, Liu J, Mushegian A. Evolutionary history of bacteriophages with double-stranded DNA genomes. Biol Direct. 2007 Dec 06; 2:36. PMID: 18062816; PMCID: PMC2222618.
    36. Klebanov L, Glazko G, Salzman P, Yakovlev A, Xiao Y. A multivariate extension of the gene set enrichment analysis. J Bioinform Comput Biol. 2007 Oct; 5(5):1139-53. PMID: 17933015.
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    37. Rogozin IB, Iyer LM, Liang L, Glazko GV, Liston VG, Pavlov YI, Aravind L, Pancer Z. Evolution and diversification of lamprey antigen receptors: evidence for involvement of an AID-APOBEC family cytosine deaminase. Nat Immunol. 2007 Jun; 8(6):647-56. PMID: 17468760.
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    38. Morray B, Goldenberg I, Moss AJ, Zareba W, Ryan D, McNitt S, Eberly SW, Glazko G, Mathew J. Polymorphisms in the paraoxonase and endothelial nitric oxide synthase genes and the risk of early-onset myocardial infarction. Am J Cardiol. 2007 Apr 15; 99(8):1100-5. PMID: 17437735.
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    39. Jaspersen SL, Martin AE, Glazko G, Giddings TH, Morgan G, Mushegian A, Winey M. The Sad1-UNC-84 homology domain in Mps3 interacts with Mps2 to connect the spindle pole body with the nuclear envelope. J Cell Biol. 2006 Aug 28; 174(5):665-75. PMID: 16923827; PMCID: PMC2064310.
    40. Glazko G, Coleman M, Mushegian A. Similarity searches in genome-wide numerical data sets. Biol Direct. 2006 May 30; 1:13. PMID: 16734895; PMCID: PMC1489924.
    41. Liu J, Glazko G, Mushegian A. Protein repertoire of double-stranded DNA bacteriophages. Virus Res. 2006 Apr; 117(1):68-80. PMID: 16490276.
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    42. Glazko GV, Babenko VN, Koonin EV, Rogozin IB. Mutational hotspots in the TP53 gene and, possibly, other tumor suppressors evolve by positive selection. Biol Direct. 2006 Jan 31; 1:4. PMID: 16542006; PMCID: PMC1403748.
    43. Alder MN, Rogozin IB, Iyer LM, Glazko GV, Cooper MD, Pancer Z. Diversity and function of adaptive immune receptors in a jawless vertebrate. Science. 2005 Dec 23; 310(5756):1970-3. PMID: 16373579.
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    44. Glazko G, Gordon A, Mushegian A. The choice of optimal distance measure in genome-wide datasets. Bioinformatics. 2005 Nov 01; 21 Suppl 3:iii3-11. PMID: 16306389.
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    45. Koonin EV, Rogozin IB, Glazko GV. p53 gain-of-function: tumor biology and bioinformatics come together. Cell Cycle. 2005 May; 4(5):686-8. PMID: 15846083.
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    46. Glazko G, Veeramachaneni V, Nei M, Makalowski W. Eighty percent of proteins are different between humans and chimpanzees. Gene. 2005 Feb 14; 346:215-9. PMID: 15716009.
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    47. Glazko GV, Koonin EV, Rogozin IB. Molecular dating: ape bones agree with chicken entrails. Trends Genet. 2005 Feb; 21(2):89-92. PMID: 15661354.
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    48. Glazko GV, Koonin EV, Rogozin IB. Mutation hotspots in the p53 gene in tumors of different origin: correlation with evolutionary conservation and signs of positive selection. Biochim Biophys Acta. 2004 Aug 12; 1679(2):95-106. PMID: 15297143.
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    49. Glazko GV, Mushegian AR. Detection of evolutionarily stable fragments of cellular pathways by hierarchical clustering of phyletic patterns. Genome Biol. 2004; 5(5):R32. PMID: 15128446; PMCID: PMC416468.
    50. Glazko GV, Koonin EV, Rogozin IB, Shabalina SA. A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions. Trends Genet. 2003 Mar; 19(3):119-24. PMID: 12615002.
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    51. Glazko GV, Nei M. Estimation of divergence times for major lineages of primate species. Mol Biol Evol. 2003 Mar; 20(3):424-34. PMID: 12644563.
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    52. Jordan IK, Rogozin IB, Glazko GV, Koonin EV. Origin of a substantial fraction of human regulatory sequences from transposable elements. Trends Genet. 2003 Feb; 19(2):68-72. PMID: 12547512.
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    53. Suzuki Y, Glazko GV, Nei M. Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proc Natl Acad Sci U S A. 2002 Dec 10; 99(25):16138-43. PMID: 12451182; PMCID: PMC138578.
    54. Glazko GB, Milanesi L, Rogozin IB. The subclass approach for mutational spectrum analysis: application of the SEM algorithm. J Theor Biol. 1998; 192(4):475-87.
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