 Connection
David Ussery to DNA, Bacterial
This is a "connection" page, showing publications David Ussery has written about DNA, Bacterial.
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Connection Strength |
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1.268 |
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Bohlin J, Skjerve E, Ussery DW. Investigations of oligonucleotide usage variance within and between prokaryotes. PLoS Comput Biol. 2008 Apr 18; 4(4):e1000057.
Score: 0.293
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Reva ON, Hallin PF, Willenbrock H, Sicheritz-Ponten T, T?mmler B, Ussery DW. Global features of the Alcanivorax borkumensis SK2 genome. Environ Microbiol. 2008 Mar; 10(3):614-25.
Score: 0.286
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Bohlin J, Skjerve E, Ussery DW. Analysis of genomic signatures in prokaryotes using multinomial regression and hierarchical clustering. BMC Genomics. 2009 Oct 21; 10:487.
Score: 0.081
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Bohlin J, Skjerve E, Ussery DW. Reliability and applications of statistical methods based on oligonucleotide frequencies in bacterial and archaeal genomes. BMC Genomics. 2008 Feb 28; 9:104.
Score: 0.072
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Willenbrock H, Petersen A, Sekse C, Kiil K, Wasteson Y, Ussery DW. Design of a seven-genome Escherichia coli microarray for comparative genomic profiling. J Bacteriol. 2006 Nov; 188(22):7713-21.
Score: 0.065
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Bendtsen JD, Binnewies TT, Hallin PF, Sicheritz-Pont?n T, Ussery DW. Genome update: prediction of secreted proteins in 225 bacterial proteomes. Microbiology (Reading). 2005 Jun; 151(Pt 6):1725-1727.
Score: 0.060
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Willenbrock H, Ussery DW. Chromatin architecture and gene expression in Escherichia coli. Genome Biol. 2004; 5(12):252.
Score: 0.058
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Petersen L, Larsen TS, Ussery DW, On SL, Krogh A. RpoD promoters in Campylobacter jejuni exhibit a strong periodic signal instead of a -35 box. J Mol Biol. 2003 Mar 07; 326(5):1361-72.
Score: 0.051
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Beatson SA, Ben Zakour NL, Totsika M, Forde BM, Watts RE, Mabbett AN, Szubert JM, Sarkar S, Phan MD, Peters KM, Petty NK, Alikhan NF, Sullivan MJ, Gawthorne JA, Stanton-Cook M, Nhu NT, Chong TM, Yin WF, Chan KG, Hancock V, Ussery DW, Ulett GC, Schembri MA. Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition. Infect Immun. 2015 May; 83(5):1749-64.
Score: 0.029
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Ali A, Naz A, Soares SC, Bakhtiar M, Tiwari S, Hassan SS, Hanan F, Ramos R, Pereira U, Barh D, Figueiredo HC, Ussery DW, Miyoshi A, Silva A, Azevedo V. Pan-genome analysis of human gastric pathogen H. pylori: comparative genomics and pathogenomics approaches to identify regions associated with pathogenicity and prediction of potential core therapeutic targets. Biomed Res Int. 2015; 2015:139580.
Score: 0.029
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Larsen MV, Cosentino S, Lukjancenko O, Saputra D, Rasmussen S, Hasman H, Sicheritz-Pont?n T, Aarestrup FM, Ussery DW, Lund O. Benchmarking of methods for genomic taxonomy. J Clin Microbiol. 2014 May; 52(5):1529-39.
Score: 0.027
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Holch A, Webb K, Lukjancenko O, Ussery D, Rosenthal BM, Gram L. Genome sequencing identifies two nearly unchanged strains of persistent Listeria monocytogenes isolated at two different fish processing plants sampled 6 years apart. Appl Environ Microbiol. 2013 May; 79(9):2944-51.
Score: 0.026
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Ali A, Soares SC, Santos AR, Guimar?es LC, Barbosa E, Almeida SS, Abreu VA, Carneiro AR, Ramos RT, Bakhtiar SM, Hassan SS, Ussery DW, On S, Silva A, Schneider MP, Lage AP, Miyoshi A, Azevedo V. Campylobacter fetus subspecies: comparative genomics and prediction of potential virulence targets. Gene. 2012 Oct 25; 508(2):145-56.
Score: 0.025
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Dillon SC, Espinosa E, Hokamp K, Ussery DW, Casades?s J, Dorman CJ. LeuO is a global regulator of gene expression in Salmonella enterica serovar Typhimurium. Mol Microbiol. 2012 Sep; 85(6):1072-89.
Score: 0.025
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Bohlin J, van Passel MW, Snipen L, Kristoffersen AB, Ussery D, Hardy SP. Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands. BMC Genomics. 2012 Feb 10; 13:66.
Score: 0.024
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Jacobsen A, Hendriksen RS, Aaresturp FM, Ussery DW, Friis C. The Salmonella enterica pan-genome. Microb Ecol. 2011 Oct; 62(3):487-504.
Score: 0.023
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Karlsson FH, Ussery DW, Nielsen J, Nookaew I. A closer look at bacteroides: phylogenetic relationship and genomic implications of a life in the human gut. Microb Ecol. 2011 Apr; 61(3):473-85.
Score: 0.022
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Bohlin J, Snipen L, Cloeckaert A, Lagesen K, Ussery D, Kristoffersen AB, Godfroid J. Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods. BMC Evol Biol. 2010 Aug 13; 10:249.
Score: 0.021
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Boyd EF, Cohen AL, Naughton LM, Ussery DW, Binnewies TT, Stine OC, Parent MA. Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus. BMC Microbiol. 2008 Jun 30; 8:110.
Score: 0.019
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Lee KB, De Backer P, Aono T, Liu CT, Suzuki S, Suzuki T, Kaneko T, Yamada M, Tabata S, Kupfer DM, Najar FZ, Wiley GB, Roe B, Binnewies TT, Ussery DW, D'Haeze W, Herder JD, Gevers D, Vereecke D, Holsters M, Oyaizu H. The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571. BMC Genomics. 2008 Jun 04; 9:271.
Score: 0.018
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Barnard FM, Loughlin MF, Fainberg HP, Messenger MP, Ussery DW, Williams P, Jenks PJ. Global regulation of virulence and the stress response by CsrA in the highly adapted human gastric pathogen Helicobacter pylori. Mol Microbiol. 2004 Jan; 51(1):15-32.
Score: 0.014
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Connection Strength
The connection strength for concepts is the sum of the scores for each matching publication.
Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
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