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Connection

David Ussery to Genomics

This is a "connection" page, showing publications David Ussery has written about Genomics.

 
Connection Strength
 
 
 
4.198
 
  1. Wassenaar TM, Jun SR, Robeson M, Ussery DW. Comparative genomics of hepatitis A virus, hepatitis C virus, and hepatitis E virus provides insights into the evolutionary history of Hepatovirus species. Microbiologyopen. 2020 02; 9(2):e973.
    View in: PubMed
    Score: 0.598
  2. Jun SR, Leuze MR, Nookaew I, Uberbacher EC, Land M, Zhang Q, Wanchai V, Chai J, Nielsen M, Trolle T, Lund O, Buzard GS, Pedersen TD, Wassenaar TM, Ussery DW. Ebolavirus comparative genomics. FEMS Microbiol Rev. 2015 Sep; 39(5):764-78.
    View in: PubMed
    Score: 0.443
  3. Vesth T, Lagesen K, Acar ?, Ussery D. CMG-biotools, a free workbench for basic comparative microbial genomics. PLoS One. 2013; 8(4):e60120.
    View in: PubMed
    Score: 0.378
  4. Ussery DW, Gordon SV. Two novel methods for using genome sequences to infer taxonomy. Microbiology (Reading). 2012 Jun; 158(Pt 6):1414.
    View in: PubMed
    Score: 0.353
  5. Leekitcharoenphon P, Lukjancenko O, Friis C, Aarestrup FM, Ussery DW. Genomic variation in Salmonella enterica core genes for epidemiological typing. BMC Genomics. 2012 Mar 12; 13:88.
    View in: PubMed
    Score: 0.351
  6. Snipen L, Alm?y T, Ussery DW. Microbial comparative pan-genomics using binomial mixture models. BMC Genomics. 2009 Aug 19; 10:385.
    View in: PubMed
    Score: 0.294
  7. Binnewies TT, Motro Y, Hallin PF, Lund O, Dunn D, La T, Hampson DJ, Bellgard M, Wassenaar TM, Ussery DW. Ten years of bacterial genome sequencing: comparative-genomics-based discoveries. Funct Integr Genomics. 2006 Jul; 6(3):165-85.
    View in: PubMed
    Score: 0.234
  8. Willenbrock H, Binnewies TT, Hallin PF, Ussery DW. Genome update: 2D clustering of bacterial genomes. Microbiology (Reading). 2005 Feb; 151(Pt 2):333-336.
    View in: PubMed
    Score: 0.215
  9. Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Mu?oz AR, Roberts RJ, Rossell?-M?ra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I. Toward unrestricted use of public genomic data. Science. 2019 01 25; 363(6425):350-352.
    View in: PubMed
    Score: 0.141
  10. Wanchai V, Patumcharoenpol P, Nookaew I, Ussery D. dBBQs: dataBase of Bacterial Quality scores. BMC Bioinformatics. 2017 12 28; 18(Suppl 14):483.
    View in: PubMed
    Score: 0.131
  11. Thompson CC, Amaral GR, Campe?o M, Edwards RA, Polz MF, Dutilh BE, Ussery DW, Sawabe T, Swings J, Thompson FL. Microbial taxonomy in the post-genomic era: rebuilding from scratch? Arch Microbiol. 2015 Apr; 197(3):359-70.
    View in: PubMed
    Score: 0.106
  12. Haugum K, Johansen J, Gabrielsen C, Brandal LT, Bergh K, Ussery DW, Drabl?s F, Afset JE. Comparative genomics to delineate pathogenic potential in non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway. PLoS One. 2014; 9(10):e111788.
    View in: PubMed
    Score: 0.105
  13. Cook H, Ussery DW. Sigma factors in a thousand E. coli genomes. Environ Microbiol. 2013 Dec; 15(12):3121-9.
    View in: PubMed
    Score: 0.097
  14. Lukjancenko O, Ussery DW, Wassenaar TM. Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera. Microb Ecol. 2012 Apr; 63(3):651-73.
    View in: PubMed
    Score: 0.086
  15. Field D, Amaral-Zettler L, Cochrane G, Cole JR, Dawyndt P, Garrity GM, Gilbert J, Gl?ckner FO, Hirschman L, Karsch-Mizrachi I, Klenk HP, Knight R, Kottmann R, Kyrpides N, Meyer F, San Gil I, Sansone SA, Schriml LM, Sterk P, Tatusova T, Ussery DW, White O, Wooley J. The Genomic Standards Consortium. PLoS Biol. 2011 Jun; 9(6):e1001088.
    View in: PubMed
    Score: 0.083
  16. Davenport C, Ussery DW, T?mmler B. Comparative genomics of green sulfur bacteria. Photosynth Res. 2010 Jun; 104(2-3):137-52.
    View in: PubMed
    Score: 0.076
  17. Wortman JR, Gilsenan JM, Joardar V, Deegan J, Clutterbuck J, Andersen MR, Archer D, Bencina M, Braus G, Coutinho P, von D?hren H, Doonan J, Driessen AJ, Durek P, Espeso E, Fekete E, Flipphi M, Estrada CG, Geysens S, Goldman G, de Groot PW, Hansen K, Harris SD, Heinekamp T, Helmstaedt K, Henrissat B, Hofmann G, Homan T, Horio T, Horiuchi H, James S, Jones M, Karaffa L, Kar?nyi Z, Kato M, Keller N, Kelly DE, Kiel JA, Kim JM, van der Klei IJ, Klis FM, Kovalchuk A, Krasevec N, Kubicek CP, Liu B, Maccabe A, Meyer V, Mirabito P, Miskei M, Mos M, Mullins J, Nelson DR, Nielsen J, Oakley BR, Osmani SA, Pakula T, Paszewski A, Paulsen I, Pilsyk S, P?csi I, Punt PJ, Ram AF, Ren Q, Robellet X, Robson G, Seiboth B, van Solingen P, Specht T, Sun J, Taheri-Talesh N, Takeshita N, Ussery D, vanKuyk PA, Visser H, van de Vondervoort PJ, de Vries RP, Walton J, Xiang X, Xiong Y, Zeng AP, Brandt BW, Cornell MJ, van den Hondel CA, Visser J, Oliver SG, Turner G. The 2008 update of the Aspergillus nidulans genome annotation: a community effort. Fungal Genet Biol. 2009 Mar; 46 Suppl 1:S2-13.
    View in: PubMed
    Score: 0.070
  18. Garrity GM, Field D, Kyrpides N, Hirschman L, Sansone SA, Angiuoli S, Cole JR, Gl?ckner FO, Kolker E, Kowalchuk G, Moran MA, Ussery D, White O. Toward a standards-compliant genomic and metagenomic publication record. OMICS. 2008 Jun; 12(2):157-60.
    View in: PubMed
    Score: 0.068
  19. Hancock V, Seshasayee AS, Ussery DW, Luscombe NM, Klemm P. Transcriptomics and adaptive genomics of the asymptomatic bacteriuria Escherichia coli strain 83972. Mol Genet Genomics. 2008 May; 279(5):523-34.
    View in: PubMed
    Score: 0.067
  20. Champ PC, Binnewies TT, Nielsen N, Zinman G, Kiil K, Wu H, Bohlin J, Ussery DW. Genome update: purine strand bias in 280 bacterial genomes. Microbiology (Reading). 2006 Mar; 152(Pt 3):579-583.
    View in: PubMed
    Score: 0.058
  21. Kill K, Binnewies TT, Sicheritz-Pont?n T, Willenbrock H, Hallin PF, Wassenaar TM, Ussery DW. Genome update: sigma factors in 240 bacterial genomes. Microbiology (Reading). 2005 Oct; 151(Pt 10):3147-3150.
    View in: PubMed
    Score: 0.056
  22. Wassenaar TM, Ussery DW, Rosel AC. Big data in genomic research for big questions with examples from covid-19 and other zoonoses. J Appl Microbiol. 2023 Jan 23; 134(1).
    View in: PubMed
    Score: 0.047
  23. Alkam D, Wongsurawat T, Nookaew I, Richardson AR, Ussery D, Smeltzer MS, Jenjaroenpun P. Is amplification bias consequential in transposon sequencing (TnSeq) assays? A case study with a Staphylococcus aureus TnSeq library subjected to PCR-based and amplification-free enrichment methods. Microb Genom. 2021 10; 7(10).
    View in: PubMed
    Score: 0.043
  24. Jenjaroenpun P, Wongsurawat T, Pereira R, Patumcharoenpol P, Ussery DW, Nielsen J, Nookaew I. Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D. Nucleic Acids Res. 2018 04 20; 46(7):e38.
    View in: PubMed
    Score: 0.034
  25. Espinoza-Valles I, Vora GJ, Lin B, Leekitcharoenphon P, Gonz?lez-Castillo A, Ussery D, H?j L, Gomez-Gil B. Unique and conserved genome regions in Vibrio harveyi and related species in comparison with the shrimp pathogen Vibrio harveyi CAIM 1792. Microbiology (Reading). 2015 Sep; 161(9):1762-1779.
    View in: PubMed
    Score: 0.028
  26. Lagesen K, Ussery DW, Wassenaar TM. Genome update: the 1000th genome--a cautionary tale. Microbiology (Reading). 2010 Mar; 156(Pt 3):603-608.
    View in: PubMed
    Score: 0.019
  27. Arvas M, Kivioja T, Mitchell A, Saloheimo M, Ussery D, Penttila M, Oliver S. Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina. BMC Genomics. 2007 Sep 17; 8:325.
    View in: PubMed
    Score: 0.016
Connection Strength

The connection strength for concepts is the sum of the scores for each matching publication.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.