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Connection

David Ussery to Genome, Bacterial

This is a "connection" page, showing publications David Ussery has written about Genome, Bacterial.

 
Connection Strength
  
 
 
7.706
  
  1. Cabal A, Jun SR, Jenjaroenpun P, Wanchai V, Nookaew I, Wongsurawat T, Burgess MJ, Kothari A, Wassenaar TM, Ussery DW. Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes. Microb Ecol. 2018 Oct; 76(3):801-813.
    View in: PubMed
    Score: 0.563
  2. Jun SR, Wassenaar TM, Nookaew I, Hauser L, Wanchai V, Land M, Timm CM, Lu TY, Schadt CW, Doktycz MJ, Pelletier DA, Ussery DW. Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis. Appl Environ Microbiol. 2016 01 01; 82(1):375-83.
    View in: PubMed
    Score: 0.480
  3. Cook H, Ussery DW. Sigma factors in a thousand E. coli genomes. Environ Microbiol. 2013 Dec; 15(12):3121-9.
    View in: PubMed
    Score: 0.413
  4. Jensen DB, Vesth TC, Hallin PF, Pedersen AG, Ussery DW. Bayesian prediction of bacterial growth temperature range based on genome sequences. BMC Genomics. 2012; 13 Suppl 7:S3.
    View in: PubMed
    Score: 0.393
  5. ?zen AI, Ussery DW. Defining the Pseudomonas genus: where do we draw the line with Azotobacter? Microb Ecol. 2012 Feb; 63(2):239-48.
    View in: PubMed
    Score: 0.358
  6. Friis C, Wassenaar TM, Javed MA, Snipen L, Lagesen K, Hallin PF, Newell DG, Toszeghy M, Ridley A, Manning G, Ussery DW. Genomic characterization of Campylobacter jejuni strain M1. PLoS One. 2010 Aug 26; 5(8):e12253.
    View in: PubMed
    Score: 0.335
  7. Coenye T, Drevinek P, Mahenthiralingam E, Shah SA, Gill RT, Vandamme P, Ussery DW. Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome. FEMS Microbiol Lett. 2007 Nov; 276(1):83-92.
    View in: PubMed
    Score: 0.276
  8. Willenbrock H, Ussery DW. Prediction of highly expressed genes in microbes based on chromatin accessibility. BMC Mol Biol. 2007 Feb 13; 8:11.
    View in: PubMed
    Score: 0.262
  9. Ussery DW. Leaner and meaner genomes in Escherichia coli. Genome Biol. 2006; 7(10):237.
    View in: PubMed
    Score: 0.257
  10. Willenbrock H, Petersen A, Sekse C, Kiil K, Wasteson Y, Ussery DW. Design of a seven-genome Escherichia coli microarray for comparative genomic profiling. J Bacteriol. 2006 Nov; 188(22):7713-21.
    View in: PubMed
    Score: 0.255
  11. Binnewies TT, Motro Y, Hallin PF, Lund O, Dunn D, La T, Hampson DJ, Bellgard M, Wassenaar TM, Ussery DW. Ten years of bacterial genome sequencing: comparative-genomics-based discoveries. Funct Integr Genomics. 2006 Jul; 6(3):165-85.
    View in: PubMed
    Score: 0.249
  12. Champ PC, Binnewies TT, Nielsen N, Zinman G, Kiil K, Wu H, Bohlin J, Ussery DW. Genome update: purine strand bias in 280 bacterial genomes. Microbiology (Reading). 2006 Mar; 152(Pt 3):579-583.
    View in: PubMed
    Score: 0.246
  13. Kiil K, Ferchaud JB, David C, Binnewies TT, Wu H, Sicheritz-Pont?n T, Willenbrock H, Ussery DW. Genome update: distribution of two-component transduction systems in 250 bacterial genomes. Microbiology (Reading). 2005 Nov; 151(Pt 11):3447-3452.
    View in: PubMed
    Score: 0.240
  14. Kill K, Binnewies TT, Sicheritz-Pont?n T, Willenbrock H, Hallin PF, Wassenaar TM, Ussery DW. Genome update: sigma factors in 240 bacterial genomes. Microbiology (Reading). 2005 Oct; 151(Pt 10):3147-3150.
    View in: PubMed
    Score: 0.239
  15. Hallin PF, Nielsen N, Devine KM, Binnewies TT, Willenbrock H, Ussery DW. Genome update: base skews in 200+ bacterial chromosomes. Microbiology (Reading). 2005 Mar; 151(Pt 3):633-637.
    View in: PubMed
    Score: 0.229
  16. Willenbrock H, Binnewies TT, Hallin PF, Ussery DW. Genome update: 2D clustering of bacterial genomes. Microbiology (Reading). 2005 Feb; 151(Pt 2):333-336.
    View in: PubMed
    Score: 0.228
  17. Hallin PF, Binnewies TT, Ussery DW. Genome update: chromosome atlases. Microbiology (Reading). 2004 Oct; 150(Pt 10):3091-3.
    View in: PubMed
    Score: 0.223
  18. Ussery DW, Tindb?k N, Hallin PF. Genome update: promoter profiles. Microbiology (Reading). 2004 Sep; 150(Pt 9):2791-2793.
    View in: PubMed
    Score: 0.221
  19. Ussery DW, Jensen MS, Poulsen TR, Hallin PF. Genome update: alignment of bacterial chromosomes. Microbiology (Reading). 2004 Aug; 150(Pt 8):2491-2493.
    View in: PubMed
    Score: 0.220
  20. Ussery DW, Hallin PF. Genome Update: annotation quality in sequenced microbial genomes. Microbiology (Reading). 2004 Jul; 150(Pt 7):2015-2017.
    View in: PubMed
    Score: 0.219
  21. Ussery DW, Hallin PF, Lagesen K, Wassenaar TM. Genome update: tRNAs in sequenced microbial genomes. Microbiology (Reading). 2004 Jun; 150(Pt 6):1603-1606.
    View in: PubMed
    Score: 0.218
  22. Wanchai V, Patumcharoenpol P, Nookaew I, Ussery D. dBBQs: dataBase of Bacterial Quality scores. BMC Bioinformatics. 2017 12 28; 18(Suppl 14):483.
    View in: PubMed
    Score: 0.139
  23. Espinoza-Valles I, Vora GJ, Lin B, Leekitcharoenphon P, Gonz?lez-Castillo A, Ussery D, H?j L, Gomez-Gil B. Unique and conserved genome regions in Vibrio harveyi and related species in comparison with the shrimp pathogen Vibrio harveyi CAIM 1792. Microbiology (Reading). 2015 Sep; 161(9):1762-1779.
    View in: PubMed
    Score: 0.118
  24. Holch A, Webb K, Lukjancenko O, Ussery D, Rosenthal BM, Gram L. Genome sequencing identifies two nearly unchanged strains of persistent Listeria monocytogenes isolated at two different fish processing plants sampled 6 years apart. Appl Environ Microbiol. 2013 May; 79(9):2944-51.
    View in: PubMed
    Score: 0.100
  25. Acevedo-Rocha CG, Fang G, Schmidt M, Ussery DW, Danchin A. From essential to persistent genes: a functional approach to constructing synthetic life. Trends Genet. 2013 May; 29(5):273-9.
    View in: PubMed
    Score: 0.098
  26. Mekalanos JJ, Robins W, Ussery DW, Davis BM, Schadt E, Waldor MK. Non-O1 Vibrio cholerae unlinked to cholera in Haiti. Proc Natl Acad Sci U S A. 2012 Nov 20; 109(47):E3206; author reply E3207.
    View in: PubMed
    Score: 0.097
  27. Larsen MV, Cosentino S, Rasmussen S, Friis C, Hasman H, Marvig RL, Jelsbak L, Sicheritz-Pont?n T, Ussery DW, Aarestrup FM, Lund O. Multilocus sequence typing of total-genome-sequenced bacteria. J Clin Microbiol. 2012 Apr; 50(4):1355-61.
    View in: PubMed
    Score: 0.092
  28. Lukjancenko O, Ussery DW, Wassenaar TM. Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera. Microb Ecol. 2012 Apr; 63(3):651-73.
    View in: PubMed
    Score: 0.091
  29. Jacobsen A, Hendriksen RS, Aaresturp FM, Ussery DW, Friis C. The Salmonella enterica pan-genome. Microb Ecol. 2011 Oct; 62(3):487-504.
    View in: PubMed
    Score: 0.088
  30. Bohlin J, Snipen L, Cloeckaert A, Lagesen K, Ussery D, Kristoffersen AB, Godfroid J. Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods. BMC Evol Biol. 2010 Aug 13; 10:249.
    View in: PubMed
    Score: 0.084
  31. Lagesen K, Ussery DW, Wassenaar TM. Genome update: the 1000th genome--a cautionary tale. Microbiology (Reading). 2010 Mar; 156(Pt 3):603-608.
    View in: PubMed
    Score: 0.080
  32. Thompson CC, Vicente AC, Souza RC, Vasconcelos AT, Vesth T, Alves N, Ussery DW, Iida T, Thompson FL. Genomic taxonomy of Vibrios. BMC Evol Biol. 2009 Oct 27; 9:258.
    View in: PubMed
    Score: 0.079
  33. Snipen L, Alm?y T, Ussery DW. Microbial comparative pan-genomics using binomial mixture models. BMC Genomics. 2009 Aug 19; 10:385.
    View in: PubMed
    Score: 0.078
  34. Miller WG, Parker CT, Rubenfield M, Mendz GL, W?sten MM, Ussery DW, Stolz JF, Binnewies TT, Hallin PF, Wang G, Malek JA, Rogosin A, Stanker LH, Mandrell RE. The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri. PLoS One. 2007 Dec 26; 2(12):e1358.
    View in: PubMed
    Score: 0.070
  35. Lav?n JL, Kiil K, Resano O, Ussery DW, Oguiza JA. Comparative genomic analysis of two-component regulatory proteins in Pseudomonas syringae. BMC Genomics. 2007 Oct 31; 8:397.
    View in: PubMed
    Score: 0.069
  36. Reen FJ, Almagro-Moreno S, Ussery D, Boyd EF. The genomic code: inferring Vibrionaceae niche specialization. Nat Rev Microbiol. 2006 09; 4(9):697-704.
    View in: PubMed
    Score: 0.063
  37. Oguiza JA, Kiil K, Ussery DW. Extracytoplasmic function sigma factors in Pseudomonas syringae. Trends Microbiol. 2005 Dec; 13(12):565-8.
    View in: PubMed
    Score: 0.060
  38. Binnewies TT, Hallin PF, St?rfeldt HH, Ussery DW. Genome Update: proteome comparisons. Microbiology (Reading). 2005 Jan; 151(Pt 1):1-4.
    View in: PubMed
    Score: 0.057
  39. Leekitcharoenphon P, Hendriksen RS, Le Hello S, Weill FX, Baggesen DL, Jun SR, Ussery DW, Lund O, Crook DW, Wilson DJ, Aarestrup FM. Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104. Appl Environ Microbiol. 2016 Apr; 82(8):2516-26.
    View in: PubMed
    Score: 0.031
  40. Beatson SA, Ben Zakour NL, Totsika M, Forde BM, Watts RE, Mabbett AN, Szubert JM, Sarkar S, Phan MD, Peters KM, Petty NK, Alikhan NF, Sullivan MJ, Gawthorne JA, Stanton-Cook M, Nhu NT, Chong TM, Yin WF, Chan KG, Hancock V, Ussery DW, Ulett GC, Schembri MA. Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition. Infect Immun. 2015 May; 83(5):1749-64.
    View in: PubMed
    Score: 0.029
  41. Karlsson FH, Ussery DW, Nielsen J, Nookaew I. A closer look at bacteroides: phylogenetic relationship and genomic implications of a life in the human gut. Microb Ecol. 2011 Apr; 61(3):473-85.
    View in: PubMed
    Score: 0.022
  42. Lav?n JL, Binnewies TT, Pisabarro AG, Ussery DW, Garc?a-Lobo JM, Oguiza JA. Differences in two-component signal transduction proteins among the genus Brucella: implications for host preference and pathogenesis. Vet Microbiol. 2010 Aug 26; 144(3-4):478-83.
    View in: PubMed
    Score: 0.020
  43. Hancock V, Seshasayee AS, Ussery DW, Luscombe NM, Klemm P. Transcriptomics and adaptive genomics of the asymptomatic bacteriuria Escherichia coli strain 83972. Mol Genet Genomics. 2008 May; 279(5):523-34.
    View in: PubMed
    Score: 0.018
Connection Strength

The connection strength for concepts is the sum of the scores for each matching publication.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.