 Connection
David Ussery to Phylogeny
This is a "connection" page, showing publications David Ussery has written about Phylogeny.
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Connection Strength |
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2.241 |
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Ussery DW, Gordon SV. Two novel methods for using genome sequences to infer taxonomy. Microbiology (Reading). 2012 Jun; 158(Pt 6):1414.
Score: 0.375
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?zen AI, Ussery DW. Defining the Pseudomonas genus: where do we draw the line with Azotobacter? Microb Ecol. 2012 Feb; 63(2):239-48.
Score: 0.358
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Wassenaar TM, Jun SR, Robeson M, Ussery DW. Comparative genomics of hepatitis A virus, hepatitis C virus, and hepatitis E virus provides insights into the evolutionary history of Hepatovirus species. Microbiologyopen. 2020 02; 9(2):e973.
Score: 0.159
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Cabal A, Jun SR, Jenjaroenpun P, Wanchai V, Nookaew I, Wongsurawat T, Burgess MJ, Kothari A, Wassenaar TM, Ussery DW. Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes. Microb Ecol. 2018 Oct; 76(3):801-813.
Score: 0.141
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Jun SR, Wassenaar TM, Wanchai V, Patumcharoenpol P, Nookaew I, Ussery DW. Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us? BMC Bioinformatics. 2017 12 28; 18(Suppl 14):471.
Score: 0.139
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Jun SR, Wassenaar TM, Nookaew I, Hauser L, Wanchai V, Land M, Timm CM, Lu TY, Schadt CW, Doktycz MJ, Pelletier DA, Ussery DW. Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis. Appl Environ Microbiol. 2016 01 01; 82(1):375-83.
Score: 0.120
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Vesth T, Lagesen K, Acar ?, Ussery D. CMG-biotools, a free workbench for basic comparative microbial genomics. PLoS One. 2013; 8(4):e60120.
Score: 0.100
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Jensen DB, Vesth TC, Hallin PF, Pedersen AG, Ussery DW. Bayesian prediction of bacterial growth temperature range based on genome sequences. BMC Genomics. 2012; 13 Suppl 7:S3.
Score: 0.098
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Leekitcharoenphon P, Lukjancenko O, Friis C, Aarestrup FM, Ussery DW. Genomic variation in Salmonella enterica core genes for epidemiological typing. BMC Genomics. 2012 Mar 12; 13:88.
Score: 0.093
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Karlsson FH, Ussery DW, Nielsen J, Nookaew I. A closer look at bacteroides: phylogenetic relationship and genomic implications of a life in the human gut. Microb Ecol. 2011 Apr; 61(3):473-85.
Score: 0.086
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Friis C, Wassenaar TM, Javed MA, Snipen L, Lagesen K, Hallin PF, Newell DG, Toszeghy M, Ridley A, Manning G, Ussery DW. Genomic characterization of Campylobacter jejuni strain M1. PLoS One. 2010 Aug 26; 5(8):e12253.
Score: 0.084
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Bohlin J, Snipen L, Hardy SP, Kristoffersen AB, Lagesen K, D?nsvik T, Skjerve E, Ussery DW. Analysis of intra-genomic GC content homogeneity within prokaryotes. BMC Genomics. 2010 Aug 06; 11:464.
Score: 0.084
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Binnewies TT, Motro Y, Hallin PF, Lund O, Dunn D, La T, Hampson DJ, Bellgard M, Wassenaar TM, Ussery DW. Ten years of bacterial genome sequencing: comparative-genomics-based discoveries. Funct Integr Genomics. 2006 Jul; 6(3):165-85.
Score: 0.062
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Worning P, Jensen LJ, Hallin PF, Staerfeldt HH, Ussery DW. Origin of replication in circular prokaryotic chromosomes. Environ Microbiol. 2006 Feb; 8(2):353-61.
Score: 0.061
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Wassenaar TM, Ussery DW, Rosel AC. Big data in genomic research for big questions with examples from covid-19 and other zoonoses. J Appl Microbiol. 2023 Jan 23; 134(1).
Score: 0.050
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Alkam D, Jenjaroenpun P, Wongsurawat T, Udaondo Z, Patumcharoenpol P, Robeson M, Haselow D, Mason W, Nookaew I, Ussery D, Jun SR. Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016. Infect Genet Evol. 2019 11; 75:103965.
Score: 0.039
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Espinoza-Valles I, Vora GJ, Lin B, Leekitcharoenphon P, Gonz?lez-Castillo A, Ussery D, H?j L, Gomez-Gil B. Unique and conserved genome regions in Vibrio harveyi and related species in comparison with the shrimp pathogen Vibrio harveyi CAIM 1792. Microbiology (Reading). 2015 Sep; 161(9):1762-1779.
Score: 0.029
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Haugum K, Johansen J, Gabrielsen C, Brandal LT, Bergh K, Ussery DW, Drabl?s F, Afset JE. Comparative genomics to delineate pathogenic potential in non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway. PLoS One. 2014; 9(10):e111788.
Score: 0.028
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Lukjancenko O, Ussery DW, Wassenaar TM. Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera. Microb Ecol. 2012 Apr; 63(3):651-73.
Score: 0.023
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Bohlin J, Snipen L, Cloeckaert A, Lagesen K, Ussery D, Kristoffersen AB, Godfroid J. Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods. BMC Evol Biol. 2010 Aug 13; 10:249.
Score: 0.021
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Davenport C, Ussery DW, T?mmler B. Comparative genomics of green sulfur bacteria. Photosynth Res. 2010 Jun; 104(2-3):137-52.
Score: 0.020
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Thompson CC, Vicente AC, Souza RC, Vasconcelos AT, Vesth T, Alves N, Ussery DW, Iida T, Thompson FL. Genomic taxonomy of Vibrios. BMC Evol Biol. 2009 Oct 27; 9:258.
Score: 0.020
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Miller WG, Parker CT, Rubenfield M, Mendz GL, W?sten MM, Ussery DW, Stolz JF, Binnewies TT, Hallin PF, Wang G, Malek JA, Rogosin A, Stanker LH, Mandrell RE. The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri. PLoS One. 2007 Dec 26; 2(12):e1358.
Score: 0.017
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Arvas M, Kivioja T, Mitchell A, Saloheimo M, Ussery D, Penttila M, Oliver S. Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina. BMC Genomics. 2007 Sep 17; 8:325.
Score: 0.017
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Reen FJ, Almagro-Moreno S, Ussery D, Boyd EF. The genomic code: inferring Vibrionaceae niche specialization. Nat Rev Microbiol. 2006 09; 4(9):697-704.
Score: 0.016
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Connection Strength
The connection strength for concepts is the sum of the scores for each matching publication.
Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
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