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Connection

David Ussery to Computational Biology

This is a "connection" page, showing publications David Ussery has written about Computational Biology.

 
Connection Strength
  
 
 
1.710
  
  1. Bendtsen JD, Binnewies TT, Hallin PF, Sicheritz-Pont?n T, Ussery DW. Genome update: prediction of secreted proteins in 225 bacterial proteomes. Microbiology (Reading). 2005 Jun; 151(Pt 6):1725-1727.
    View in: PubMed
    Score: 0.228
  2. Ussery DW, de Lichtenberg U, Jensen LJ. Crystal ball. Systems biology: in the broadest sense of the word. Environ Microbiol. 2005 Apr; 7(4):482-3.
    View in: PubMed
    Score: 0.226
  3. Hallin PF, Ussery DW. CBS Genome Atlas Database: a dynamic storage for bioinformatic results and sequence data. Bioinformatics. 2004 Dec 12; 20(18):3682-6.
    View in: PubMed
    Score: 0.215
  4. Abram K, Udaondo Z, Bleker C, Wanchai V, Wassenaar TM, Robeson MS, Ussery DW. Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups. Commun Biol. 2021 01 26; 4(1):117.
    View in: PubMed
    Score: 0.169
  5. Jenjaroenpun P, Wongsurawat T, Wadley TD, Wassenaar TM, Liu J, Dai Q, Wanchai V, Akel NS, Jamshidi-Parsian A, Franco AT, Boysen G, Jennings ML, Ussery DW, He C, Nookaew I. Decoding the epitranscriptional landscape from native RNA sequences. Nucleic Acids Res. 2021 01 25; 49(2):e7.
    View in: PubMed
    Score: 0.169
  6. Patel L, Shukla T, Huang X, Ussery DW, Wang S. Machine Learning Methods in Drug Discovery. Molecules. 2020 Nov 12; 25(22).
    View in: PubMed
    Score: 0.167
  7. Lav?n JL, Ram?rez L, Ussery DW, Pisabarro AG, Oguiza JA. Genomic analysis of two-component signal transduction proteins in basidiomycetes. J Mol Microbiol Biotechnol. 2010; 18(2):63-73.
    View in: PubMed
    Score: 0.079
  8. Hallin PF, Binnewies TT, Ussery DW. The genome BLASTatlas-a GeneWiz extension for visualization of whole-genome homology. Mol Biosyst. 2008 May; 4(5):363-71.
    View in: PubMed
    Score: 0.069
  9. Coenye T, Drevinek P, Mahenthiralingam E, Shah SA, Gill RT, Vandamme P, Ussery DW. Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome. FEMS Microbiol Lett. 2007 Nov; 276(1):83-92.
    View in: PubMed
    Score: 0.067
  10. Lagesen K, Hallin P, R?dland EA, Staerfeldt HH, Rognes T, Ussery DW. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 2007; 35(9):3100-8.
    View in: PubMed
    Score: 0.065
  11. Oguiza JA, Kiil K, Ussery DW. Extracytoplasmic function sigma factors in Pseudomonas syringae. Trends Microbiol. 2005 Dec; 13(12):565-8.
    View in: PubMed
    Score: 0.059
  12. Jensen LJ, Ussery DW, Brunak S. Functionality of system components: conservation of protein function in protein feature space. Genome Res. 2003 Nov; 13(11):2444-9.
    View in: PubMed
    Score: 0.051
  13. Zhang Q, Jun SR, Leuze M, Ussery D, Nookaew I. Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer. Sci Rep. 2017 01 19; 7:40712.
    View in: PubMed
    Score: 0.032
  14. Espinoza-Valles I, Vora GJ, Lin B, Leekitcharoenphon P, Gonz?lez-Castillo A, Ussery D, H?j L, Gomez-Gil B. Unique and conserved genome regions in Vibrio harveyi and related species in comparison with the shrimp pathogen Vibrio harveyi CAIM 1792. Microbiology (Reading). 2015 Sep; 161(9):1762-1779.
    View in: PubMed
    Score: 0.029
  15. Karlsson FH, Ussery DW, Nielsen J, Nookaew I. A closer look at bacteroides: phylogenetic relationship and genomic implications of a life in the human gut. Microb Ecol. 2011 Apr; 61(3):473-85.
    View in: PubMed
    Score: 0.021
  16. Wang K, Ussery DW, Brunak S. Analysis and prediction of gene splice sites in four Aspergillus genomes. Fungal Genet Biol. 2009 Mar; 46 Suppl 1:S14-8.
    View in: PubMed
    Score: 0.018
  17. Boyd EF, Cohen AL, Naughton LM, Ussery DW, Binnewies TT, Stine OC, Parent MA. Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus. BMC Microbiol. 2008 Jun 30; 8:110.
    View in: PubMed
    Score: 0.018
  18. Arvas M, Kivioja T, Mitchell A, Saloheimo M, Ussery D, Penttila M, Oliver S. Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina. BMC Genomics. 2007 Sep 17; 8:325.
    View in: PubMed
    Score: 0.017
  19. Cases I, Ussery DW, de Lorenzo V. The sigma54 regulon (sigmulon) of Pseudomonas putida. Environ Microbiol. 2003 Dec; 5(12):1281-93.
    View in: PubMed
    Score: 0.013
Connection Strength

The connection strength for concepts is the sum of the scores for each matching publication.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.