 Connection
David Ussery to Computational Biology
This is a "connection" page, showing publications David Ussery has written about Computational Biology.
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Connection Strength |
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1.603 |
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Bendtsen JD, Binnewies TT, Hallin PF, Sicheritz-Pont?n T, Ussery DW. Genome update: prediction of secreted proteins in 225 bacterial proteomes. Microbiology (Reading). 2005 Jun; 151(Pt 6):1725-1727.
Score: 0.214
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Ussery DW, de Lichtenberg U, Jensen LJ. Crystal ball. Systems biology: in the broadest sense of the word. Environ Microbiol. 2005 Apr; 7(4):482-3.
Score: 0.211
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Hallin PF, Ussery DW. CBS Genome Atlas Database: a dynamic storage for bioinformatic results and sequence data. Bioinformatics. 2004 Dec 12; 20(18):3682-6.
Score: 0.201
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Abram K, Udaondo Z, Bleker C, Wanchai V, Wassenaar TM, Robeson MS, Ussery DW. Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups. Commun Biol. 2021 01 26; 4(1):117.
Score: 0.158
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Jenjaroenpun P, Wongsurawat T, Wadley TD, Wassenaar TM, Liu J, Dai Q, Wanchai V, Akel NS, Jamshidi-Parsian A, Franco AT, Boysen G, Jennings ML, Ussery DW, He C, Nookaew I. Decoding the epitranscriptional landscape from native RNA sequences. Nucleic Acids Res. 2021 01 25; 49(2):e7.
Score: 0.158
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Patel L, Shukla T, Huang X, Ussery DW, Wang S. Machine Learning Methods in Drug Discovery. Molecules. 2020 Nov 12; 25(22).
Score: 0.156
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Lav?n JL, Ram?rez L, Ussery DW, Pisabarro AG, Oguiza JA. Genomic analysis of two-component signal transduction proteins in basidiomycetes. J Mol Microbiol Biotechnol. 2010; 18(2):63-73.
Score: 0.074
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Hallin PF, Binnewies TT, Ussery DW. The genome BLASTatlas-a GeneWiz extension for visualization of whole-genome homology. Mol Biosyst. 2008 May; 4(5):363-71.
Score: 0.065
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Coenye T, Drevinek P, Mahenthiralingam E, Shah SA, Gill RT, Vandamme P, Ussery DW. Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome. FEMS Microbiol Lett. 2007 Nov; 276(1):83-92.
Score: 0.063
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Lagesen K, Hallin P, R?dland EA, Staerfeldt HH, Rognes T, Ussery DW. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 2007; 35(9):3100-8.
Score: 0.061
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Oguiza JA, Kiil K, Ussery DW. Extracytoplasmic function sigma factors in Pseudomonas syringae. Trends Microbiol. 2005 Dec; 13(12):565-8.
Score: 0.055
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Jensen LJ, Ussery DW, Brunak S. Functionality of system components: conservation of protein function in protein feature space. Genome Res. 2003 Nov; 13(11):2444-9.
Score: 0.048
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Zhang Q, Jun SR, Leuze M, Ussery D, Nookaew I. Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer. Sci Rep. 2017 01 19; 7:40712.
Score: 0.030
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Espinoza-Valles I, Vora GJ, Lin B, Leekitcharoenphon P, Gonz?lez-Castillo A, Ussery D, H?j L, Gomez-Gil B. Unique and conserved genome regions in Vibrio harveyi and related species in comparison with the shrimp pathogen Vibrio harveyi CAIM 1792. Microbiology (Reading). 2015 Sep; 161(9):1762-1779.
Score: 0.027
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Karlsson FH, Ussery DW, Nielsen J, Nookaew I. A closer look at bacteroides: phylogenetic relationship and genomic implications of a life in the human gut. Microb Ecol. 2011 Apr; 61(3):473-85.
Score: 0.020
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Wang K, Ussery DW, Brunak S. Analysis and prediction of gene splice sites in four Aspergillus genomes. Fungal Genet Biol. 2009 Mar; 46 Suppl 1:S14-8.
Score: 0.017
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Boyd EF, Cohen AL, Naughton LM, Ussery DW, Binnewies TT, Stine OC, Parent MA. Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus. BMC Microbiol. 2008 Jun 30; 8:110.
Score: 0.017
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Arvas M, Kivioja T, Mitchell A, Saloheimo M, Ussery D, Penttila M, Oliver S. Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina. BMC Genomics. 2007 Sep 17; 8:325.
Score: 0.016
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Cases I, Ussery DW, de Lorenzo V. The sigma54 regulon (sigmulon) of Pseudomonas putida. Environ Microbiol. 2003 Dec; 5(12):1281-93.
Score: 0.012
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Connection Strength
The connection strength for concepts is the sum of the scores for each matching publication.
Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
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