Zulema Udaondo Dominguez
Title | Post Doctoral Fellow |
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Institution | University of Arkansas for Medical Sciences |
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Department | Biomedical Informatics, College of Medicine |
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Division | Biomedical Informatics Admin |
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Address | 501 Jack Stephens Drive Mail Slot # 782 Little Rock AR 72205
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Phone | 501-526-4055 |
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ORCID
.gif) | 0000-0003-3445-6842  |
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vCard | Download vCard |
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Overview Affiliation Spanish Society of Biotechnology (SEBIOT) American Society for Microbiology (ASM) Editorial Board, Microbial Biotechnology Journal International Evaluator for The Coordination and Evaluation Subdivision of the State Research Agency (AEI) of Spain mBio Junior Editor Board, Early Career Researcher Reviewer Program
Biography University of Granada, Spain | Doctorate of Philosophy | 2016 | Biochemistry and Molecular Biology program | University of Granada, Spain | Master’s degree in Biotechnology | 2013 | Biotechnology | Complutense University of Madrid, Spain | Master's degree in Bioinformatics & Computational Biology | 2011 | Bioinformatics & Computational Biology | Autonomous University of Madrid, Spain | Graduated in Biology Sciences | 2009 | Evolutionary Biology and Biodiversity | Humanejos Institute, Spain | Senior Laboratory Technician | 2002 | Senior Laboratory Technician | The Margarita Salas Center for Biological Research. Spanish National Research Council. Madrid, Spain | Research training | 2011 | Computational Biology |
2016 - 2016 | Graduated with honors in my PhD studies: Cum laude. International mention, University of Granada |
Teaching Research 1R21AI169138-01 (NIH/NIAID)May 10, 2022 - Apr 30, 2024 NIH/NIAID Real-Time High Resolution Method for Genomic Surveillance of ESKAPE pathogens Role: Co-Investigator |
| COM Barton (Se-Ran Jun)Jan 1, 2022 - Dec 31, 2022 UAMS The epigenomic stress-induced mechanisms in Daptomycin & Vancomycin-Resistant Enterococcus faecium Role: Co-Investigator |
Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications.
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Udaondo Z, Sittikankaew K, Uengwetwanit T, Wongsurawat T, Sonthirod C, Jenjaroenpun P, Pootakham W, Karoonuthaisiri N, Nookaew I. Comparative Analysis of PacBio and Oxford Nanopore Sequencing Technologies for Transcriptomic Landscape Identification of Penaeus monodon. Life (Basel). 2021 Aug 23; 11(8). PMID: 34440606.
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Jun SR, Boerma M, Udaondo Z, Richardson S, Thrall KD, Miousse IR, Seng J, Pathak R, Hauer-Jensen M. Plasma Metabolomics in a Nonhuman Primate Model of Abdominal Radiation Exposure. Metabolites. 2021 Aug 13; 11(8). PMID: 34436481.
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Molina L, Udaondo Z, Montero-Curiel M, Wittich RM, García-Puente A, Segura A. Clover Root Exudates Favor Novosphingobium sp. HR1a Establishment in the Rhizosphere and Promote Phenanthrene Rhizoremediation. mSphere. 2021 08 25; 6(4):e0041221. PMID: 34378981.
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Moon SH, Udaondo Z, Li X, Yang X, Jun SR, Huang E. Isolation and characterisation of carbapenemase-producing and polymyxin B-resistant Enterobacter bugandensis from a vegetable. J Glob Antimicrob Resist. 2021 09; 26:264-265. PMID: 34329791.
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Segura A, Udaondo Z, Molina L. PahT regulates carbon fluxes in Novosphingobium sp. HR1a and influences its survival in soil and rhizospheres. Environ Microbiol. 2021 06; 23(6):2969-2991. PMID: 33817928.
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Abram K, Udaondo Z, Bleker C, Wanchai V, Wassenaar TM, Robeson MS, Ussery DW. Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups. Commun Biol. 2021 01 26; 4(1):117. PMID: 33500552.
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Udaondo Z, Matilla MA. Mining for novel antibiotics in the age of antimicrobial resistance. Microb Biotechnol. 2020 11; 13(6):1702-1704. PMID: 32881368.
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Udaondo Z, Duque E, Daddaoua A, Caselles C, Roca A, Pizarro-Tobias P, Ramos JL. Developing robust protein analysis profiles to identify bacterial acid phosphatases in genomes and metagenomic libraries. Environ Microbiol. 2020 08; 22(8):3561-3571. PMID: 32564477.
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Udaondo Z, Jenjaroenpun P, Wongsurawat T, Meyers E, Anderson C, Lopez J, Mohan M, Tytarenko R, Walker B, Ussery D, Kothari A, Jun SR. Two Cases of Vancomycin-Resistant Enterococcus faecium Bacteremia With Development of Daptomycin-Resistant Phenotype and its Detection Using Oxford Nanopore Sequencing. Open Forum Infect Dis. 2020 Jun; 7(6):ofaa180. PMID: 32550237.
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Udaondo Z, Huertas MJ. Fighting the enemy: one health approach against microbial resistance. Microb Biotechnol. 2020 07; 13(4):888-891. PMID: 32483942.
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Rubio-Gómez JM, Santiago CM, Udaondo Z, Garitaonaindia MT, Krell T, Ramos JL, Daddaoua A. Full Transcriptomic Response of Pseudomonas aeruginosa to an Inulin-Derived Fructooligosaccharide. Front Microbiol. 2020; 11:202. PMID: 32153524.
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Jenjaroenpun P, Wongsurawat T, Udaondo Z, Anderson C, Lopez J, Mohan M, Tytarenko R, Walker B, Nookaew I, Ussery D, Kothari A, Jun SR. Complete Genome Sequences of Four Isolates of Vancomycin-Resistant Enterococcus faecium with the vanA Gene and Two Daptomycin Resistance Mutations, Obtained from Two Inpatients with Prolonged Bacteremia. Microbiol Resour Announc. 2020 Feb 06; 9(6). PMID: 32029568.
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Alkam D, Jenjaroenpun P, Wongsurawat T, Udaondo Z, Patumcharoenpol P, Robeson M, Haselow D, Mason W, Nookaew I, Ussery D, Jun SR. Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016. Infect Genet Evol. 2019 11; 75:103965. PMID: 31319177.
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Udaondo Z, Molina-Santiago C. Microbiomes as the new keystone for life sciences development. Microb Biotechnol. 2019 07; 12(4):579-581. PMID: 31066202.
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Udaondo Z, Wongsurawat T, Jenjaroenpun P, Anderson C, Lopez J, Mohan M, Tytarenko R, Walker B, Nookaew I, Ussery D, Kothari A, Jun SR. Draft Genome Sequences of 48 Vancomycin-Resistant Enterococcus faecium Strains Isolated from Inpatients with Bacteremia and Urinary Tract Infection. Microbiol Resour Announc. 2019 Apr 11; 8(15). PMID: 30975810.
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Abram KZ, Udaondo Z. Towards a better metabolic engineering reference: the microbial chassis. Microb Biotechnol. 2020 01; 13(1):17-18. PMID: 30589218.
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Matilla MA, Udaondo Z, Salmond GPC. Genome Sequence of the Oocydin A-Producing Rhizobacterium Serratia plymuthica 4Rx5. Microbiol Resour Announc. 2018 Sep; 7(11). PMID: 30533641.
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Duque E, Daddaoua A, Cordero BF, Udaondo Z, Molina-Santiago C, Roca A, Solano J, Molina-Alcaide E, Segura A, Ramos JL. Ruminal metagenomic libraries as a source of relevant hemicellulolytic enzymes for biofuel production. Microb Biotechnol. 2018 07; 11(4):781-787. PMID: 29663699.
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Udaondo Z, Ramos JL, Segura A, Krell T, Daddaoua A. Regulation of carbohydrate degradation pathways in Pseudomonas involves a versatile set of transcriptional regulators. Microb Biotechnol. 2018 05; 11(3):442-454. PMID: 29607620.
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Molina-Santiago C, Udaondo Z, Cordero BF, Ramos JL. Interspecies cross-talk between co-cultured Pseudomonas putida and Escherichia coli. Environ Microbiol Rep. 2017 08; 9(4):441-448. PMID: 28585781.
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Udaondo Z, Duque E, Ramos JL. The pangenome of the genus Clostridium. Environ Microbiol. 2017 07; 19(7):2588-2603. PMID: 28321969.
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Matilla MA, Udaondo Z, Krell T, Salmond GP. Genome Sequence of Serratia marcescens MSU97, a Plant-Associated Bacterium That Makes Multiple Antibiotics. Genome Announc. 2017 Mar 02; 5(9). PMID: 28254993.
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Molina L, Geoffroy VA, Segura A, Udaondo Z, Ramos JL. Iron Uptake Analysis in a Set of Clinical Isolates of Pseudomonas putida. Front Microbiol. 2016; 7:2100. PMID: 28082966.
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Molina-Santiago C, Udaondo Z, Gómez-Lozano M, Molin S, Ramos JL. Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene. Environ Microbiol. 2017 02; 19(2):645-658. PMID: 27768818.
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Molina-Santiago C, Cordero BF, Daddaoua A, Udaondo Z, Manzano J, Valdivia M, Segura A, Ramos JL, Duque E. Pseudomonas putida as a platform for the synthesis of aromatic compounds. Microbiology (Reading). 2016 09; 162(9):1535-1543. PMID: 27417954.
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Matilla MA, Drew A, Udaondo Z, Krell T, Salmond GP. Genome Sequence of Serratia plymuthica A153, a Model Rhizobacterium for the Investigation of the Synthesis and Regulation of Haterumalides, Zeamine, and Andrimid. Genome Announc. 2016 May 19; 4(3). PMID: 27198016.
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Molina L, Udaondo Z, Duque E, Fernández M, Bernal P, Roca A, de la Torre J, Ramos JL. Specific Gene Loci of Clinical Pseudomonas putida Isolates. PLoS One. 2016; 11(1):e0147478. PMID: 26820467.
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Ramos JL, Udaondo Z, Fernández B, Molina C, Daddaoua A, Segura A, Duque E. First- and second-generation biochemicals from sugars: biosynthesis of itaconic acid. Microb Biotechnol. 2016 Jan; 9(1):8-10. PMID: 26639664.
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Udaondo Z, Molina L, Segura A, Duque E, Ramos JL. Analysis of the core genome and pangenome of Pseudomonas putida. Environ Microbiol. 2016 10; 18(10):3268-3283. PMID: 26261031.
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Pascual J, Udaondo Z, Molina L, Segura A, Esteve-Núñez A, Caballero A, Duque E, Ramos JL, van Dillewijn P. Draft Genome Sequence of Pseudomonas putida JLR11, a Facultative Anaerobic 2,4,6-Trinitrotoluene Biotransforming Bacterium. Genome Announc. 2015 Sep 03; 3(5). PMID: 26337875.
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Martín-Moldes Z, Zamarro MT, Del Cerro C, Valencia A, Gómez MJ, Arcas A, Udaondo Z, García JL, Nogales J, Carmona M, Díaz E. Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features. Syst Appl Microbiol. 2015 Oct; 38(7):462-71. PMID: 26259823.
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Molina-Santiago C, Udaondo Z, Daddaoua A, Roca A, Martín J, Pérez-Victoria I, Reyes F, Ramos JL. Efflux pump-deficient mutants as a platform to search for microbes that produce antibiotics. Microb Biotechnol. 2015 Jul; 8(4):716-25. PMID: 26059350.
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Ramos JL, Sol Cuenca M, Molina-Santiago C, Segura A, Duque E, Gómez-García MR, Udaondo Z, Roca A. Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida. FEMS Microbiol Rev. 2015 Jul; 39(4):555-66. PMID: 25934123.
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Molina-Santiago C, Daddaoua A, Gómez-Lozano M, Udaondo Z, Molin S, Ramos JL. Differential transcriptional response to antibiotics by Pseudomonas putida DOT-T1E. Environ Microbiol. 2015 Sep; 17(9):3251-62. PMID: 25581266.
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Molina-Santiago C, Udaondo Z, Ramos JL. Draft whole-genome sequence of the antibiotic-producing soil isolate Pseudomonas sp. strain 250J. Environ Microbiol Rep. 2015 Apr; 7(2):288-92. PMID: 25403737.
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Fernández M, Udaondo Z, Niqui JL, Duque E, Ramos JL. Synergic role of the two ars operons in arsenic tolerance in Pseudomonas putida KT2440. Environ Microbiol Rep. 2014 Oct; 6(5):483-9. PMID: 25646541.
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Molina L, Udaondo Z, Duque E, Fernández M, Molina-Santiago C, Roca A, Porcel M, de la Torre J, Segura A, Plesiat P, Jeannot K, Ramos JL. Antibiotic resistance determinants in a Pseudomonas putida strain isolated from a hospital. PLoS One. 2014; 9(1):e81604. PMID: 24465371.
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Molina L, Bernal P, Udaondo Z, Segura A, Ramos JL. Complete Genome Sequence of a Pseudomonas putida Clinical Isolate, Strain H8234. Genome Announc. 2013 Jul 18; 1(4). PMID: 23868128.
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Udaondo Z, Molina L, Daniels C, Gómez MJ, Molina-Henares MA, Matilla MA, Roca A, Fernández M, Duque E, Segura A, Ramos JL. Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome. Microb Biotechnol. 2013 Sep; 6(5):598-611. PMID: 23815283.
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Roca A, Pizarro-Tobías P, Udaondo Z, Fernández M, Matilla MA, Molina-Henares MA, Molina L, Segura A, Duque E, Ramos JL. Analysis of the plant growth-promoting properties encoded by the genome of the rhizobacterium Pseudomonas putida BIRD-1. Environ Microbiol. 2013 Mar; 15(3):780-94. PMID: 23206161.
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Daddaoua A, Fillet S, Fernández M, Udaondo Z, Krell T, Ramos JL. Genes for carbon metabolism and the ToxA virulence factor in Pseudomonas aeruginosa are regulated through molecular interactions of PtxR and PtxS. PLoS One. 2012; 7(7):e39390. PMID: 22844393.
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Udaondo Z, Duque E, Fernández M, Molina L, de la Torre J, Bernal P, Niqui JL, Pini C, Roca A, Matilla MA, Molina-Henares MA, Silva-Jiménez H, Navarro-Avilés G, Busch A, Lacal J, Krell T, Segura A, Ramos JL. Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants. FEBS Lett. 2012 Aug 31; 586(18):2932-8. PMID: 22819823.
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Molina-Santiago C, Udaondo Z, Marin A, García-Salamanca A, Michán C, Daniels C, Molina L, Ramos JL. Evolution of antibiotic resistance, catabolic pathways and niche colonization. Microb Biotechnol. 2012 Jul; 5(4):452-4. PMID: 22676058.
This graph shows the total number of publications by year, by first, middle/unknown, or last author.
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Year | Publications |
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2012 | 4 | 2013 | 2 | 2014 | 2 | 2015 | 8 | 2016 | 5 | 2017 | 3 | 2018 | 4 | 2019 | 3 | 2020 | 6 | 2021 | 6 |
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