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Zulema Udaondo Dominguez

TitlePost Doctoral Fellow
InstitutionUniversity of Arkansas for Medical Sciences
DepartmentBiomedical Informatics, College of Medicine
DivisionBiomedical Informatics Admin
Address501 Jack Stephens Drive
Mail Slot # 782
Little Rock AR 72205
Phone501-526-4055
ORCID ORCID Icon0000-0003-3445-6842 Additional info
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    Collapse Overview 

    Collapse Affiliation 
    Collapse member of
    Spanish Society of Biotechnology (SEBIOT)
    American Society for Microbiology (ASM)
    Editorial Board, Microbial Biotechnology Journal
    International Evaluator for The Coordination and Evaluation Subdivision of the State Research Agency (AEI) of Spain
    mBio Junior Editor Board, Early Career Researcher Reviewer Program

    Collapse Biography 
    Collapse education and training
    University of Granada, SpainDoctorate of Philosophy2016Biochemistry and Molecular Biology program
    University of Granada, SpainMaster’s degree in Biotechnology2013Biotechnology
    Complutense University of Madrid, SpainMaster's degree in Bioinformatics & Computational Biology2011Bioinformatics & Computational Biology
    Autonomous University of Madrid, SpainGraduated in Biology Sciences2009Evolutionary Biology and Biodiversity
    Humanejos Institute, SpainSenior Laboratory Technician2002Senior Laboratory Technician
    The Margarita Salas Center for Biological Research. Spanish National Research Council. Madrid, SpainResearch training2011Computational Biology
    Collapse awards and honors
    2016 - 2016Graduated with honors in my PhD studies: Cum laude. International mention, University of Granada

    Collapse Teaching 

    Collapse Research 
    Collapse research activities and funding
    1R21AI169138-01     (NIH/NIAID)May 10, 2022 - Apr 30, 2024
    NIH/NIAID
    Real-Time High Resolution Method for Genomic Surveillance of ESKAPE pathogens
    Role: Co-Investigator
    COM Barton     (Se-Ran Jun)Jan 1, 2022 - Dec 31, 2022
    UAMS
    The epigenomic stress-induced mechanisms in Daptomycin & Vancomycin-Resistant Enterococcus faecium
    Role: Co-Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions. Don't see publications published under other names? Login to add alternative names.
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    1. Udaondo Z, Sittikankaew K, Uengwetwanit T, Wongsurawat T, Sonthirod C, Jenjaroenpun P, Pootakham W, Karoonuthaisiri N, Nookaew I. Comparative Analysis of PacBio and Oxford Nanopore Sequencing Technologies for Transcriptomic Landscape Identification of Penaeus monodon. Life (Basel). 2021 Aug 23; 11(8). PMID: 34440606.
      View in: PubMed
    2. Jun SR, Boerma M, Udaondo Z, Richardson S, Thrall KD, Miousse IR, Seng J, Pathak R, Hauer-Jensen M. Plasma Metabolomics in a Nonhuman Primate Model of Abdominal Radiation Exposure. Metabolites. 2021 Aug 13; 11(8). PMID: 34436481.
      View in: PubMed
    3. Molina L, Udaondo Z, Montero-Curiel M, Wittich RM, García-Puente A, Segura A. Clover Root Exudates Favor Novosphingobium sp. HR1a Establishment in the Rhizosphere and Promote Phenanthrene Rhizoremediation. mSphere. 2021 08 25; 6(4):e0041221. PMID: 34378981.
      View in: PubMed
    4. Moon SH, Udaondo Z, Li X, Yang X, Jun SR, Huang E. Isolation and characterisation of carbapenemase-producing and polymyxin B-resistant Enterobacter bugandensis from a vegetable. J Glob Antimicrob Resist. 2021 09; 26:264-265. PMID: 34329791.
      View in: PubMed
    5. Segura A, Udaondo Z, Molina L. PahT regulates carbon fluxes in Novosphingobium sp. HR1a and influences its survival in soil and rhizospheres. Environ Microbiol. 2021 06; 23(6):2969-2991. PMID: 33817928.
      View in: PubMed
    6. Abram K, Udaondo Z, Bleker C, Wanchai V, Wassenaar TM, Robeson MS, Ussery DW. Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups. Commun Biol. 2021 01 26; 4(1):117. PMID: 33500552.
      View in: PubMed
    7. Udaondo Z, Matilla MA. Mining for novel antibiotics in the age of antimicrobial resistance. Microb Biotechnol. 2020 11; 13(6):1702-1704. PMID: 32881368.
      View in: PubMed
    8. Udaondo Z, Duque E, Daddaoua A, Caselles C, Roca A, Pizarro-Tobias P, Ramos JL. Developing robust protein analysis profiles to identify bacterial acid phosphatases in genomes and metagenomic libraries. Environ Microbiol. 2020 08; 22(8):3561-3571. PMID: 32564477.
      View in: PubMed
    9. Udaondo Z, Jenjaroenpun P, Wongsurawat T, Meyers E, Anderson C, Lopez J, Mohan M, Tytarenko R, Walker B, Ussery D, Kothari A, Jun SR. Two Cases of Vancomycin-Resistant Enterococcus faecium Bacteremia With Development of Daptomycin-Resistant Phenotype and its Detection Using Oxford Nanopore Sequencing. Open Forum Infect Dis. 2020 Jun; 7(6):ofaa180. PMID: 32550237.
      View in: PubMed
    10. Udaondo Z, Huertas MJ. Fighting the enemy: one health approach against microbial resistance. Microb Biotechnol. 2020 07; 13(4):888-891. PMID: 32483942.
      View in: PubMed
    11. Rubio-Gómez JM, Santiago CM, Udaondo Z, Garitaonaindia MT, Krell T, Ramos JL, Daddaoua A. Full Transcriptomic Response of Pseudomonas aeruginosa to an Inulin-Derived Fructooligosaccharide. Front Microbiol. 2020; 11:202. PMID: 32153524.
      View in: PubMed
    12. Jenjaroenpun P, Wongsurawat T, Udaondo Z, Anderson C, Lopez J, Mohan M, Tytarenko R, Walker B, Nookaew I, Ussery D, Kothari A, Jun SR. Complete Genome Sequences of Four Isolates of Vancomycin-Resistant Enterococcus faecium with the vanA Gene and Two Daptomycin Resistance Mutations, Obtained from Two Inpatients with Prolonged Bacteremia. Microbiol Resour Announc. 2020 Feb 06; 9(6). PMID: 32029568.
      View in: PubMed
    13. Alkam D, Jenjaroenpun P, Wongsurawat T, Udaondo Z, Patumcharoenpol P, Robeson M, Haselow D, Mason W, Nookaew I, Ussery D, Jun SR. Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016. Infect Genet Evol. 2019 11; 75:103965. PMID: 31319177.
      View in: PubMed
    14. Udaondo Z, Molina-Santiago C. Microbiomes as the new keystone for life sciences development. Microb Biotechnol. 2019 07; 12(4):579-581. PMID: 31066202.
      View in: PubMed
    15. Udaondo Z, Wongsurawat T, Jenjaroenpun P, Anderson C, Lopez J, Mohan M, Tytarenko R, Walker B, Nookaew I, Ussery D, Kothari A, Jun SR. Draft Genome Sequences of 48 Vancomycin-Resistant Enterococcus faecium Strains Isolated from Inpatients with Bacteremia and Urinary Tract Infection. Microbiol Resour Announc. 2019 Apr 11; 8(15). PMID: 30975810.
      View in: PubMed
    16. Abram KZ, Udaondo Z. Towards a better metabolic engineering reference: the microbial chassis. Microb Biotechnol. 2020 01; 13(1):17-18. PMID: 30589218.
      View in: PubMed
    17. Matilla MA, Udaondo Z, Salmond GPC. Genome Sequence of the Oocydin A-Producing Rhizobacterium Serratia plymuthica 4Rx5. Microbiol Resour Announc. 2018 Sep; 7(11). PMID: 30533641.
      View in: PubMed
    18. Duque E, Daddaoua A, Cordero BF, Udaondo Z, Molina-Santiago C, Roca A, Solano J, Molina-Alcaide E, Segura A, Ramos JL. Ruminal metagenomic libraries as a source of relevant hemicellulolytic enzymes for biofuel production. Microb Biotechnol. 2018 07; 11(4):781-787. PMID: 29663699.
      View in: PubMed
    19. Udaondo Z, Ramos JL, Segura A, Krell T, Daddaoua A. Regulation of carbohydrate degradation pathways in Pseudomonas involves a versatile set of transcriptional regulators. Microb Biotechnol. 2018 05; 11(3):442-454. PMID: 29607620.
      View in: PubMed
    20. Molina-Santiago C, Udaondo Z, Cordero BF, Ramos JL. Interspecies cross-talk between co-cultured Pseudomonas putida and Escherichia coli. Environ Microbiol Rep. 2017 08; 9(4):441-448. PMID: 28585781.
      View in: PubMed
    21. Udaondo Z, Duque E, Ramos JL. The pangenome of the genus Clostridium. Environ Microbiol. 2017 07; 19(7):2588-2603. PMID: 28321969.
      View in: PubMed
    22. Matilla MA, Udaondo Z, Krell T, Salmond GP. Genome Sequence of Serratia marcescens MSU97, a Plant-Associated Bacterium That Makes Multiple Antibiotics. Genome Announc. 2017 Mar 02; 5(9). PMID: 28254993.
      View in: PubMed
    23. Molina L, Geoffroy VA, Segura A, Udaondo Z, Ramos JL. Iron Uptake Analysis in a Set of Clinical Isolates of Pseudomonas putida. Front Microbiol. 2016; 7:2100. PMID: 28082966.
      View in: PubMed
    24. Molina-Santiago C, Udaondo Z, Gómez-Lozano M, Molin S, Ramos JL. Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene. Environ Microbiol. 2017 02; 19(2):645-658. PMID: 27768818.
      View in: PubMed
    25. Molina-Santiago C, Cordero BF, Daddaoua A, Udaondo Z, Manzano J, Valdivia M, Segura A, Ramos JL, Duque E. Pseudomonas putida as a platform for the synthesis of aromatic compounds. Microbiology (Reading). 2016 09; 162(9):1535-1543. PMID: 27417954.
      View in: PubMed
    26. Matilla MA, Drew A, Udaondo Z, Krell T, Salmond GP. Genome Sequence of Serratia plymuthica A153, a Model Rhizobacterium for the Investigation of the Synthesis and Regulation of Haterumalides, Zeamine, and Andrimid. Genome Announc. 2016 May 19; 4(3). PMID: 27198016.
      View in: PubMed
    27. Molina L, Udaondo Z, Duque E, Fernández M, Bernal P, Roca A, de la Torre J, Ramos JL. Specific Gene Loci of Clinical Pseudomonas putida Isolates. PLoS One. 2016; 11(1):e0147478. PMID: 26820467.
      View in: PubMed
    28. Ramos JL, Udaondo Z, Fernández B, Molina C, Daddaoua A, Segura A, Duque E. First- and second-generation biochemicals from sugars: biosynthesis of itaconic acid. Microb Biotechnol. 2016 Jan; 9(1):8-10. PMID: 26639664.
      View in: PubMed
    29. Udaondo Z, Molina L, Segura A, Duque E, Ramos JL. Analysis of the core genome and pangenome of Pseudomonas putida. Environ Microbiol. 2016 10; 18(10):3268-3283. PMID: 26261031.
      View in: PubMed
    30. Pascual J, Udaondo Z, Molina L, Segura A, Esteve-Núñez A, Caballero A, Duque E, Ramos JL, van Dillewijn P. Draft Genome Sequence of Pseudomonas putida JLR11, a Facultative Anaerobic 2,4,6-Trinitrotoluene Biotransforming Bacterium. Genome Announc. 2015 Sep 03; 3(5). PMID: 26337875.
      View in: PubMed
    31. Martín-Moldes Z, Zamarro MT, Del Cerro C, Valencia A, Gómez MJ, Arcas A, Udaondo Z, García JL, Nogales J, Carmona M, Díaz E. Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features. Syst Appl Microbiol. 2015 Oct; 38(7):462-71. PMID: 26259823.
      View in: PubMed
    32. Molina-Santiago C, Udaondo Z, Daddaoua A, Roca A, Martín J, Pérez-Victoria I, Reyes F, Ramos JL. Efflux pump-deficient mutants as a platform to search for microbes that produce antibiotics. Microb Biotechnol. 2015 Jul; 8(4):716-25. PMID: 26059350.
      View in: PubMed
    33. Ramos JL, Sol Cuenca M, Molina-Santiago C, Segura A, Duque E, Gómez-García MR, Udaondo Z, Roca A. Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida. FEMS Microbiol Rev. 2015 Jul; 39(4):555-66. PMID: 25934123.
      View in: PubMed
    34. Molina-Santiago C, Daddaoua A, Gómez-Lozano M, Udaondo Z, Molin S, Ramos JL. Differential transcriptional response to antibiotics by Pseudomonas putida DOT-T1E. Environ Microbiol. 2015 Sep; 17(9):3251-62. PMID: 25581266.
      View in: PubMed
    35. Molina-Santiago C, Udaondo Z, Ramos JL. Draft whole-genome sequence of the antibiotic-producing soil isolate Pseudomonas sp. strain 250J. Environ Microbiol Rep. 2015 Apr; 7(2):288-92. PMID: 25403737.
      View in: PubMed
    36. Fernández M, Udaondo Z, Niqui JL, Duque E, Ramos JL. Synergic role of the two ars operons in arsenic tolerance in Pseudomonas putida KT2440. Environ Microbiol Rep. 2014 Oct; 6(5):483-9. PMID: 25646541.
      View in: PubMed
    37. Molina L, Udaondo Z, Duque E, Fernández M, Molina-Santiago C, Roca A, Porcel M, de la Torre J, Segura A, Plesiat P, Jeannot K, Ramos JL. Antibiotic resistance determinants in a Pseudomonas putida strain isolated from a hospital. PLoS One. 2014; 9(1):e81604. PMID: 24465371.
      View in: PubMed
    38. Molina L, Bernal P, Udaondo Z, Segura A, Ramos JL. Complete Genome Sequence of a Pseudomonas putida Clinical Isolate, Strain H8234. Genome Announc. 2013 Jul 18; 1(4). PMID: 23868128.
      View in: PubMed
    39. Udaondo Z, Molina L, Daniels C, Gómez MJ, Molina-Henares MA, Matilla MA, Roca A, Fernández M, Duque E, Segura A, Ramos JL. Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome. Microb Biotechnol. 2013 Sep; 6(5):598-611. PMID: 23815283.
      View in: PubMed
    40. Roca A, Pizarro-Tobías P, Udaondo Z, Fernández M, Matilla MA, Molina-Henares MA, Molina L, Segura A, Duque E, Ramos JL. Analysis of the plant growth-promoting properties encoded by the genome of the rhizobacterium Pseudomonas putida BIRD-1. Environ Microbiol. 2013 Mar; 15(3):780-94. PMID: 23206161.
      View in: PubMed
    41. Daddaoua A, Fillet S, Fernández M, Udaondo Z, Krell T, Ramos JL. Genes for carbon metabolism and the ToxA virulence factor in Pseudomonas aeruginosa are regulated through molecular interactions of PtxR and PtxS. PLoS One. 2012; 7(7):e39390. PMID: 22844393.
      View in: PubMed
    42. Udaondo Z, Duque E, Fernández M, Molina L, de la Torre J, Bernal P, Niqui JL, Pini C, Roca A, Matilla MA, Molina-Henares MA, Silva-Jiménez H, Navarro-Avilés G, Busch A, Lacal J, Krell T, Segura A, Ramos JL. Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants. FEBS Lett. 2012 Aug 31; 586(18):2932-8. PMID: 22819823.
      View in: PubMed
    43. Molina-Santiago C, Udaondo Z, Marin A, García-Salamanca A, Michán C, Daniels C, Molina L, Ramos JL. Evolution of antibiotic resistance, catabolic pathways and niche colonization. Microb Biotechnol. 2012 Jul; 5(4):452-4. PMID: 22676058.
      View in: PubMed
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