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Thidathip Wongsurawat

TitleInstructor
InstitutionUniversity of Arkansas for Medical Sciences
DepartmentBiomedical Informatics, College of Medicine
Address325 S. Elm St.
Mail Slot # 782
Little Rock AR 72205
Phone501-352-3820
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    Collapse Overview 
    Collapse overview
    My name is Tip. I joined DBMI in Jan, 2017. I have received many supports from my key mentors Prof.Ussery and Assoc.Prof.Nookaew to build my own lab to conduct scientific research. My interests focus on utilizing new DNA and RNA sequencing technology to answer biological questions faster than previous, for example, rapid-detection of antimicrobial resistance genes, same-day viral detection, glioblastoma RNA sequencing. I’m working with many UAMS physicians, researchers, and students and I train people to use this technology in their research. Since 2018, I have been a member of Bioinformatics Core under The Centers of Biomedical Research Excellence (COBRE) grant (P20GM125503) , NIH. This core provides cutting-edge analyses of large datasets.


    Collapse Affiliation 
    Collapse member of
    American Society for Microbiology

    Collapse Research Funds 
    Collapse research overview
    P20GM125503 (O'BRIEN, CHARLES A) Feb 16, 2018 - Jan 31, 2023
    NIH/NIGMS
    Center for Musculoskeletal Disease Research (CMDR)
    Role: Post-doc staff (Bioinformatics core)

    Collapse research activities
    UG1HD090876-01     (Timothy Onarecker)Dec 1, 2019 - Aug 31, 2020
    NIH, ISPCTN Pilot
    Rapid Genomic Sequencing of Pneumococcal Meningitis Isolates
    Role Description: Goal: To evaluate the feasibility of a rapid sequencing approach to identifying pneumococcal patterns of resistance in pediatric meningitis and blood stream isolates.
    Role: Co-Investigator

    AWD00053341     (Co-PI: Thidathip Wongsurawat & David Davilla)Mar 1, 2019 - Feb 29, 2020
    Arkansas Research Alliance (ARA)
    Gut Microbiome Changes in Obstructive Sleep Apnea Patients
    Role Description: Sleep apnea is highly associated with many other common disorders including hypertension, diabetes and obesity, all of which are especially prevalent in Arkansas. A common underlying mechanism that links these various disorders is unknown, however, abnormalities in the diversity and richness of gut bacterial populations (microbiome) have been documented in patients with each of these three associated disorders. CPAP treatment also benefits hypertension and diabetes. We hypothesize that abnormalities in the gut microbiome will be found in patients with OSA, will improve with CPAP treatment and will shed light toward a common mechanism linking these various disorders.
    Role: Principal Investigator

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    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions. Don't see publications published under other names? Login to add alternative names.
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    1. Woo CC, Liu W, Lin XY, Dorajoo R, Lee KW, Richards AM, Lee CN, Wongsurawat T, Nookaew I, Sorokin V. The interaction between 30b-5p miRNA and MBNL1 mRNA is involved in vascular smooth muscle cell differentiation in patients with coronary atherosclerosis. Int J Mol Sci. 2019 Dec 18; 21(1). PMID: 31861407.
      View in: PubMed
    2. Wongsurawat T, Nakagawa M, Atiq O, Coleman HN, Jenjaroenpun P, Allred JI, Trammel A, Puengrang P, Ussery DW, Nookaew I. An assessment of Oxford Nanopore sequencing for human gut metagenome profiling: A pilot study of head and neck cancer patients. J Microbiol Methods. 2019 Nov; 166:105739. PMID: 31626891.
      View in: PubMed
    3. Alkam D, Jenjaroenpun P, Wongsurawat T, Udaondo Z, Patumcharoenpol P, Robeson M, Haselow D, Mason W, Nookaew I, Ussery D, Jun SR. Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016. Infect Genet Evol. 2019 11; 75:103965. PMID: 31319177.
      View in: PubMed
    4. Intarajak T, Udomchaiprasertkul W, Bunyoo C, Yimnoon J, Soonklang K, Wiriyaukaradecha K, Lamlertthon W, Sricharunrat T, Chaiwiriyawong W, Siriphongpreeda B, Sutheeworapong S, Kusonmano K, Kittichotirat W, Thammarongtham C, Jenjaroenpun P, Wongsurawat T, Nookaew I, Auewarakul C, Cheevadhanarak S. Genetic Aberration Analysis in Thai Colorectal Adenoma and Early-Stage Adenocarcinoma Patients by Whole-Exome Sequencing. Cancers (Basel). 2019 Jul 12; 11(7). PMID: 31336886.
      View in: PubMed
    5. Udaondo Z, Wongsurawat T, Jenjaroenpun P, Anderson C, Lopez J, Mohan M, Tytarenko R, Walker B, Nookaew I, Ussery D, Kothari A, Jun SR. Draft Genome Sequences of 48 Vancomycin-Resistant Enterococcus faecium Strains Isolated from Inpatients with Bacteremia and Urinary Tract Infection. Microbiol Resour Announc. 2019 Apr 11; 8(15). PMID: 30975810.
      View in: PubMed
    6. Gurley BJ, Miousse IR, Nookaew I, Ewing LE, Skinner CM, Jenjaroenpun P, Wongsurawat T, Kennon-McGill S, Avula B, Bae JY, McGill MR, Ussery D, Khan IA, Koturbash I. Decaffeinated Green Tea Extract Does Not Elicit Hepatotoxic Effects and Modulates the Gut Microbiome in Lean B6C3F1 Mice. Nutrients. 2019 Apr 03; 11(4). PMID: 30987244.
      View in: PubMed
    7. Wadley TD, Jenjaroenpun P, Wongsurawat T, Ussery DW, Nookaew I. Complete Genome and Plasmid Sequences of Escherichia coli Type Strain ATCC 11775. Microbiol Resour Announc. 2019 Feb; 8(9). PMID: 30834378.
      View in: PubMed
    8. Wongsurawat T, Jenjaroenpun P, Taylor MK, Lee J, Tolardo AL, Parvathareddy J, Kandel S, Wadley TD, Kaewnapan B, Athipanyasilp N, Skidmore A, Chung D, Chaimayo C, Whitt M, Kantakamalakul W, Sutthent R, Horthongkham N, Ussery DW, Jonsson CB, Nookaew I. Rapid Sequencing of Multiple RNA Viruses in Their Native Form. Front Microbiol. 2019; 10:260. PMID: 30858830.
      View in: PubMed
    9. Wongsurawat T, Jenjaroenpun P, Athipanyasilp N, Kaewnapan B, Leelahakorn N, Angkasekwinai N, Kantakamalakul W, Sutthent R, Ussery DW, Horthongkham N, Nookaew I. Genome Sequences of Zika Virus Strains Recovered from Amniotic Fluid, Placenta, and Fetal Brain of a Microcephaly Patient in Thailand, 2017. Microbiol Resour Announc. 2018 Sep; 7(11). PMID: 30533643.
      View in: PubMed
    10. Wongsurawat T, Athipanyasilp N, Jenjaroenpun P, Jun SR, Kaewnapan B, Wassenaar TM, Leelahakorn N, Angkasekwinai N, Kantakamalakul W, Ussery DW, Sutthent R, Nookaew I, Horthongkham N. Case of Microcephaly after Congenital Infection with Asian Lineage Zika Virus, Thailand. Emerg Infect Dis. 2018 09; 24(9). PMID: 29985788.
      View in: PubMed
    11. Kuznetsov VA, Bondarenko V, Wongsurawat T, Yenamandra SP, Jenjaroenpun P. Toward predictive R-loop computational biology: genome-scale prediction of R-loops reveals their association with complex promoter structures, G-quadruplexes and transcriptionally active enhancers. Nucleic Acids Res. 2018 09 06; 46(15):7566-7585. PMID: 29945198.
      View in: PubMed
    12. Apopa PL, Alley L, Penney RB, Arnaoutakis K, Steliga MA, Jeffus S, Bircan E, Gopalan B, Jin J, Patumcharoenpol P, Jenjaroenpun P, Wongsurawat T, Shah N, Boysen G, Ussery D, Nookaew I, Fagan P, Bebek G, Orloff MS. PARP1 Is Up-Regulated in Non-small Cell Lung Cancer Tissues in the Presence of the Cyanobacterial Toxin Microcystin. Front Microbiol. 2018; 9:1757. PMID: 30127774.
      View in: PubMed
    13. Derda AA, Woo CC, Wongsurawat T, Richards M, Lee CN, Kofidis T, Kuznetsov VA, Sorokin VA. Gene expression profile analysis of aortic vascular smooth muscle cells reveals upregulation of cadherin genes in myocardial infarction patients. Physiol Genomics. 2018 08 01; 50(8):648-657. PMID: 29775430.
      View in: PubMed
    14. Jenjaroenpun P, Wongsurawat T, Pereira R, Patumcharoenpol P, Ussery DW, Nielsen J, Nookaew I. Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D. Nucleic Acids Res. 2018 04 20; 46(7):e38. PMID: 29346625.
      View in: PubMed
    15. Cabal A, Jun SR, Jenjaroenpun P, Wanchai V, Nookaew I, Wongsurawat T, Burgess MJ, Kothari A, Wassenaar TM, Ussery DW. Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes. Microb Ecol. 2018 Oct; 76(3):801-813. PMID: 29445826.
      View in: PubMed
    16. Wongsurawat T, Woo CC, Giannakakis A, Lin XY, Cheow ESH, Lee CN, Richards M, Sze SK, Nookaew I, Kuznetsov VA, Sorokin V. Transcriptome alterations of vascular smooth muscle cells in aortic wall of myocardial infarction patients. Data Brief. 2018 Apr; 17:1112-1135. PMID: 29876469.
      View in: PubMed
    17. Wongsurawat T, Woo CC, Giannakakis A, Lin XY, Cheow ESH, Lee CN, Richards M, Sze SK, Nookaew I, Kuznetsov VA, Sorokin V. Distinctive molecular signature and activated signaling pathways in aortic smooth muscle cells of patients with myocardial infarction. Atherosclerosis. 2018 04; 271:237-244. PMID: 29395098.
      View in: PubMed
    18. Alkam D, Wongsurawat T, Jenjaroenpun P, Connor S, Hobbs C, Wassenaar TM, Jun SR, Nookaew I, Ussery D. Three Complete Genome Sequences of Genotype G Mumps Virus from the 2016 Outbreak in Arkansas, USA. Genome Announc. 2017 Aug 10; 5(32). PMID: 28798162.
      View in: PubMed
    19. Jenjaroenpun P, Wongsurawat T, Sutheeworapong S, Kuznetsov VA. R-loopDB: a database for R-loop forming sequences (RLFS) and R-loops. Nucleic Acids Res. 2017 01 04; 45(D1):D119-D127. PMID: 27899586.
      View in: PubMed
    20. Jenjaroenpun P, Wongsurawat T, Yenamandra SP, Kuznetsov VA. QmRLFS-finder: a model, web server and stand-alone tool for prediction and analysis of R-loop forming sequences. Nucleic Acids Res. 2015 Nov 16; 43(20):10081. PMID: 26400173.
      View in: PubMed
    21. Jenjaroenpun P, Wongsurawat T, Yenamandra SP, Kuznetsov VA. QmRLFS-finder: a model, web server and stand-alone tool for prediction and analysis of R-loop forming sequences. Nucleic Acids Res. 2015 Jul 01; 43(W1):W527-34. PMID: 25883153.
      View in: PubMed
    22. Chirakul S, Bartpho T, Wongsurawat T, Taweechaisupapong S, Karoonutaisiri N, Talaat AM, Wongratanacheewin S, Ernst RK, Sermswan RW. Characterization of BPSS1521 (bprD), a regulator of Burkholderia pseudomallei virulence gene expression in the mouse model. PLoS One. 2014; 9(8):e104313. PMID: 25111708.
      View in: PubMed
    23. Yeo AJ, Becherel OJ, Luff JE, Cullen JK, Wongsurawat T, Jenjaroenpun P, Jenjaroenpoon P, Kuznetsov VA, McKinnon PJ, Lavin MF. R-loops in proliferating cells but not in the brain: implications for AOA2 and other autosomal recessive ataxias. PLoS One. 2014; 9(3):e90219. PMID: 24637776.
      View in: PubMed
    24. Bartpho T, Wongsurawat T, Wongratanacheewin S, Talaat AM, Karoonuthaisiri N, Sermswan RW. Genomic islands as a marker to differentiate between clinical and environmental Burkholderia pseudomallei. PLoS One. 2012; 7(6):e37762. PMID: 22675491.
      View in: PubMed
    25. Wongsurawat T, Jenjaroenpun P, Kwoh CK, Kuznetsov V. Quantitative model of R-loop forming structures reveals a novel level of RNA-DNA interactome complexity. Nucleic Acids Res. 2012 Jan; 40(2):e16. PMID: 22121227.
      View in: PubMed
    26. Wongsurawat T, Leelatanawit R, Thamniemdee N, Uawisetwathana U, Karoonuthaisiri N, Menasveta P, Klinbunga S. Identification of testis-relevant genes using in silico analysis from testis ESTs and cDNA microarray in the black tiger shrimp (Penaeus monodon). BMC Mol Biol. 2010 Aug 09; 11:55. PMID: 20696033.
      View in: PubMed
    27. Karoonuthaisiri N, Sittikankeaw K, Preechaphol R, Kalachikov S, Wongsurawat T, Uawisetwathana U, Russo JJ, Ju J, Klinbunga S, Kirtikara K. ReproArray(GTS): a cDNA microarray for identification of reproduction-related genes in the giant tiger shrimp Penaeus monodon and characterization of a novel nuclear autoantigenic sperm protein (NASP) gene. Comp Biochem Physiol Part D Genomics Proteomics. 2009 Jun; 4(2):90-9. PMID: 20403739.
      View in: PubMed
    28. Nakkuntod J, Wongsurawat T, Charoenwongse P, Snabboon T, Sridama V, Hirankarn N. Association of TNF-alpha, TNF-beta, IFN-gamma and IL-1Ra gene polymorphisms with Graves' disease in the Thai population. Asian Pac J Allergy Immunol. 2006 Dec; 24(4):207-11. PMID: 17348243.
      View in: PubMed
    29. Wongsurawat T, Nakkuntod J, Charoenwongse P, Snabboon T, Sridama V, Hirankarn N. The association between HLA class II haplotype with Graves' disease in Thai population. Tissue Antigens. 2006 Jan; 67(1):79-83. PMID: 16451208.
      View in: PubMed
    30. Nakkuntod J, Wongsurawat T, Charoenwongse P, Snabboon T, Sridama V, Hirankarn N. No association between an interleukin 4 gene promoter (-589) polymorphism and Graves' disease in Thai patients. J Med Assoc Thai. 2004 Sep; 87 Suppl 2:S123-8. PMID: 16083175.
      View in: PubMed
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